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Items: 1 to 20 of 58

1.

Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans.

Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC.

Genome Res. 2011 Feb;21(2):286-300. doi: 10.1101/gr.113050.110. Epub 2010 Dec 22.

2.

Modifications of small RNAs and their associated proteins.

Kim YK, Heo I, Kim VN.

Cell. 2010 Nov 24;143(5):703-9. doi: 10.1016/j.cell.2010.11.018. Review.

3.

Dicer-independent, Ago2-mediated microRNA biogenesis in vertebrates.

Yang JS, Lai EC.

Cell Cycle. 2010 Nov 15;9(22):4455-60. Epub 2010 Nov 15.

4.

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness.

Burroughs AM, Ando Y, de Hoon MJ, Tomaru Y, Nishibu T, Ukekawa R, Funakoshi T, Kurokawa T, Suzuki H, Hayashizaki Y, Daub CO.

Genome Res. 2010 Oct;20(10):1398-410. doi: 10.1101/gr.106054.110. Epub 2010 Aug 18.

5.

Target RNA-directed trimming and tailing of small silencing RNAs.

Ameres SL, Horwich MD, Hung JH, Xu J, Ghildiyal M, Weng Z, Zamore PD.

Science. 2010 Jun 18;328(5985):1534-9. doi: 10.1126/science.1187058.

6.

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes.

Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP.

Genes Dev. 2010 May 15;24(10):992-1009. doi: 10.1101/gad.1884710. Epub 2010 Apr 22.

7.

Evolutionary flux of canonical microRNAs and mirtrons in Drosophila.

Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC.

Nat Genet. 2010 Jan;42(1):6-9; author reply 9-10. doi: 10.1038/ng0110-6. No abstract available.

8.

Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway.

Ghildiyal M, Xu J, Seitz H, Weng Z, Zamore PD.

RNA. 2010 Jan;16(1):43-56. doi: 10.1261/rna.1972910. Epub 2009 Nov 16.

9.

Hierarchical rules for Argonaute loading in Drosophila.

Czech B, Zhou R, Erlich Y, Brennecke J, Binari R, Villalta C, Gordon A, Perrimon N, Hannon GJ.

Mol Cell. 2009 Nov 13;36(3):445-56. doi: 10.1016/j.molcel.2009.09.028.

10.

Distinct mechanisms for microRNA strand selection by Drosophila Argonautes.

Okamura K, Liu N, Lai EC.

Mol Cell. 2009 Nov 13;36(3):431-44. doi: 10.1016/j.molcel.2009.09.027.

11.

Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells.

Hagan JP, Piskounova E, Gregory RI.

Nat Struct Mol Biol. 2009 Oct;16(10):1021-5. doi: 10.1038/nsmb.1676. Epub 2009 Aug 27.

12.

LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans.

Lehrbach NJ, Armisen J, Lightfoot HL, Murfitt KJ, Bugaut A, Balasubramanian S, Miska EA.

Nat Struct Mol Biol. 2009 Oct;16(10):1016-20. doi: 10.1038/nsmb.1675. Epub 2009 Aug 27.

13.

TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation.

Heo I, Joo C, Kim YK, Ha M, Yoon MJ, Cho J, Yeom KH, Han J, Kim VN.

Cell. 2009 Aug 21;138(4):696-708. doi: 10.1016/j.cell.2009.08.002.

14.

Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line.

Lau NC, Robine N, Martin R, Chung WJ, Niki Y, Berezikov E, Lai EC.

Genome Res. 2009 Oct;19(10):1776-85. doi: 10.1101/gr.094896.109. Epub 2009 Jun 18.

15.

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Langmead B, Trapnell C, Pop M, Salzberg SL.

Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4.

16.

Many roads to maturity: microRNA biogenesis pathways and their regulation.

Winter J, Jung S, Keller S, Gregory RI, Diederichs S.

Nat Cell Biol. 2009 Mar;11(3):228-34. doi: 10.1038/ncb0309-228. Review.

PMID:
19255566
17.

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.

Katoh T, Sakaguchi Y, Miyauchi K, Suzuki T, Kashiwabara S, Baba T, Suzuki T.

Genes Dev. 2009 Feb 15;23(4):433-8. doi: 10.1101/gad.1761509.

18.

Biogenesis of small RNAs in animals.

Kim VN, Han J, Siomi MC.

Nat Rev Mol Cell Biol. 2009 Feb;10(2):126-39. doi: 10.1038/nrm2632. Review.

PMID:
19165215
19.

A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate.

Shi W, Hendrix D, Levine M, Haley B.

Nat Struct Mol Biol. 2009 Feb;16(2):183-9. doi: 10.1038/nsmb.1536. Epub 2009 Jan 18.

20.

Posttranscriptional crossregulation between Drosha and DGCR8.

Han J, Pedersen JS, Kwon SC, Belair CD, Kim YK, Yeom KH, Yang WY, Haussler D, Blelloch R, Kim VN.

Cell. 2009 Jan 9;136(1):75-84. doi: 10.1016/j.cell.2008.10.053.

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