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Items: 1 to 20 of 54

1.

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg AF, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM 3rd, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X; modENCODE Consortium, Ahringer J, Strome S, Gunsalus KC, Micklem G, Liu XS, Reinke V, Kim SK, Hillier LW, Henikoff S, Piano F, Snyder M, Stein L, Lieb JD, Waterston RH.

Science. 2010 Dec 24;330(6012):1775-87. doi: 10.1126/science.1196914. Epub 2010 Dec 22. Erratum in: Science. 2011 Jan 7;331(6013):30.

2.

Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2.

Ikegami K, Egelhofer TA, Strome S, Lieb JD.

Genome Biol. 2010;11(12):R120. doi: 10.1186/gb-2010-11-12-r120. Epub 2010 Dec 23.

3.

The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny.

Rechtsteiner A, Ercan S, Takasaki T, Phippen TM, Egelhofer TA, Wang W, Kimura H, Lieb JD, Strome S.

PLoS Genet. 2010 Sep 2;6(9):e1001091. doi: 10.1371/journal.pgen.1001091.

4.

Trans-generational epigenetic regulation of C. elegans primordial germ cells.

Furuhashi H, Takasaki T, Rechtsteiner A, Li T, Kimura H, Checchi PM, Strome S, Kelly WG.

Epigenetics Chromatin. 2010 Aug 12;3(1):15. doi: 10.1186/1756-8935-3-15.

5.

Members of the H3K4 trimethylation complex regulate lifespan in a germline-dependent manner in C. elegans.

Greer EL, Maures TJ, Hauswirth AG, Green EM, Leeman DS, Maro GS, Han S, Banko MR, Gozani O, Brunet A.

Nature. 2010 Jul 15;466(7304):383-7. doi: 10.1038/nature09195. Epub 2010 Jun 16.

6.

PR-Set7-mediated monomethylation of histone H4 lysine 20 at specific genomic regions induces transcriptional repression.

Congdon LM, Houston SI, Veerappan CS, Spektor TM, Rice JC.

J Cell Biochem. 2010 Jun 1;110(3):609-19. doi: 10.1002/jcb.22570.

PMID:
20512922
7.

Targeting X chromosomes for repression.

Meyer BJ.

Curr Opin Genet Dev. 2010 Apr;20(2):179-89. doi: 10.1016/j.gde.2010.03.008. Epub 2010 Apr 8. Review.

8.

A cellular memory of developmental history generates phenotypic diversity in C. elegans.

Hall SE, Beverly M, Russ C, Nusbaum C, Sengupta P.

Curr Biol. 2010 Jan 26;20(2):149-55. doi: 10.1016/j.cub.2009.11.035. Epub 2010 Jan 14.

9.

A native chromatin purification system for epigenomic profiling in Caenorhabditis elegans.

Ooi SL, Henikoff JG, Henikoff S.

Nucleic Acids Res. 2010 Mar;38(4):e26. doi: 10.1093/nar/gkp1090. Epub 2009 Dec 4.

10.

Cytoskeletal forces span the nuclear envelope to coordinate meiotic chromosome pairing and synapsis.

Sato A, Isaac B, Phillips CM, Rillo R, Carlton PM, Wynne DJ, Kasad RA, Dernburg AF.

Cell. 2009 Nov 25;139(5):907-19. doi: 10.1016/j.cell.2009.10.039. Epub 2009 Nov 12.

11.

The C. elegans dosage compensation complex propagates dynamically and independently of X chromosome sequence.

Ercan S, Dick LL, Lieb JD.

Curr Biol. 2009 Nov 17;19(21):1777-87. doi: 10.1016/j.cub.2009.09.047. Epub 2009 Oct 22.

12.

Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning.

Gu SG, Fire A.

Chromosoma. 2010 Feb;119(1):73-87. doi: 10.1007/s00412-009-0235-3. Epub 2009 Aug 25.

13.

CEAS: cis-regulatory element annotation system.

Shin H, Liu T, Manrai AK, Liu XS.

Bioinformatics. 2009 Oct 1;25(19):2605-6. doi: 10.1093/bioinformatics/btp479. Epub 2009 Aug 18.

PMID:
19689956
14.

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets.

Nicol JW, Helt GA, Blanchard SG Jr, Raja A, Loraine AE.

Bioinformatics. 2009 Oct 15;25(20):2730-1. doi: 10.1093/bioinformatics/btp472. Epub 2009 Aug 4.

15.

Identification of chromosome sequence motifs that mediate meiotic pairing and synapsis in C. elegans.

Phillips CM, Meng X, Zhang L, Chretien JH, Urnov FD, Dernburg AF.

Nat Cell Biol. 2009 Aug;11(8):934-42. doi: 10.1038/ncb1904. Epub 2009 Jul 20. Erratum in: Nat Cell Biol. 2009 Sep;11(9):1163.

16.

An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans.

Meissner B, Warner A, Wong K, Dube N, Lorch A, McKay SJ, Khattra J, Rogalski T, Somasiri A, Chaudhry I, Fox RM, Miller DM 3rd, Baillie DL, Holt RA, Jones SJ, Marra MA, Moerman DG.

PLoS Genet. 2009 Jun;5(6):e1000537. doi: 10.1371/journal.pgen.1000537. Epub 2009 Jun 26.

17.

Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE.

Wang X, Zhao Y, Wong K, Ehlers P, Kohara Y, Jones SJ, Marra MA, Holt RA, Moerman DG, Hansen D.

BMC Genomics. 2009 May 9;10:213. doi: 10.1186/1471-2164-10-213.

18.

Biochemical mechanisms of gene regulation by polycomb group protein complexes.

Müller J, Verrijzer P.

Curr Opin Genet Dev. 2009 Apr;19(2):150-8. doi: 10.1016/j.gde.2009.03.001. Epub 2009 Apr 1. Review.

PMID:
19345089
19.

Recombinational landscape and population genomics of Caenorhabditis elegans.

Rockman MV, Kruglyak L.

PLoS Genet. 2009 Mar;5(3):e1000419. doi: 10.1371/journal.pgen.1000419. Epub 2009 Mar 13.

20.

A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome.

Jans J, Gladden JM, Ralston EJ, Pickle CS, Michel AH, Pferdehirt RR, Eisen MB, Meyer BJ.

Genes Dev. 2009 Mar 1;23(5):602-18. doi: 10.1101/gad.1751109.

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