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Items: 1 to 20 of 69

1.

Regulation of alternative splicing by the core spliceosomal machinery.

Saltzman AL, Pan Q, Blencowe BJ.

Genes Dev. 2011 Feb 15;25(4):373-84. doi: 10.1101/gad.2004811.

2.

First come, first served revisited: factors affecting the same alternative splicing event have different effects on the relative rates of intron removal.

de la Mata M, Lafaille C, Kornblihtt AR.

RNA. 2010 May;16(5):904-12. doi: 10.1261/rna.1993510. Epub 2010 Mar 31.

3.

Regulation of alternative splicing by histone modifications.

Luco RF, Pan Q, Tominaga K, Blencowe BJ, Pereira-Smith OM, Misteli T.

Science. 2010 Feb 19;327(5968):996-1000. doi: 10.1126/science.1184208. Epub 2010 Feb 4.

4.

Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila.

Nechaev S, Fargo DC, dos Santos G, Liu L, Gao Y, Adelman K.

Science. 2010 Jan 15;327(5963):335-8. doi: 10.1126/science.1181421. Epub 2009 Dec 10.

5.

Co-transcriptional splicing of constitutive and alternative exons.

Pandya-Jones A, Black DL.

RNA. 2009 Oct;15(10):1896-908. doi: 10.1261/rna.1714509. Epub 2009 Aug 5.

6.

SR proteins in vertical integration of gene expression from transcription to RNA processing to translation.

Zhong XY, Wang P, Han J, Rosenfeld MG, Fu XD.

Mol Cell. 2009 Jul 10;35(1):1-10. doi: 10.1016/j.molcel.2009.06.016. Review.

7.

DNA damage regulates alternative splicing through inhibition of RNA polymerase II elongation.

Muñoz MJ, Pérez Santangelo MS, Paronetto MP, de la Mata M, Pelisch F, Boireau S, Glover-Cutter K, Ben-Dov C, Blaustein M, Lozano JJ, Bird G, Bentley D, Bertrand E, Kornblihtt AR.

Cell. 2009 May 15;137(4):708-20. doi: 10.1016/j.cell.2009.03.010. Erratum in: Cell. 2009 Oct 2;139(1):211.

8.

7SK snRNP/P-TEFb couples transcription elongation with alternative splicing and is essential for vertebrate development.

Barboric M, Lenasi T, Chen H, Johansen EB, Guo S, Peterlin BM.

Proc Natl Acad Sci U S A. 2009 May 12;106(19):7798-803. doi: 10.1073/pnas.0903188106. Epub 2009 Apr 27.

9.

ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions.

Schmidt D, Wilson MD, Spyrou C, Brown GD, Hadfield J, Odom DT.

Methods. 2009 Jul;48(3):240-8. doi: 10.1016/j.ymeth.2009.03.001. Epub 2009 Mar 9.

10.

Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing.

Schor IE, Rascovan N, Pelisch F, Alló M, Kornblihtt AR.

Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4325-30. doi: 10.1073/pnas.0810666106. Epub 2009 Feb 26.

11.

RNA Pol II accumulates at promoters of growth genes during developmental arrest.

Baugh LR, Demodena J, Sternberg PW.

Science. 2009 Apr 3;324(5923):92-4. doi: 10.1126/science.1169628. Epub 2009 Feb 26.

12.

Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation.

Loomis RJ, Naoe Y, Parker JB, Savic V, Bozovsky MR, Macfarlan T, Manley JL, Chakravarti D.

Mol Cell. 2009 Feb 27;33(4):450-61. doi: 10.1016/j.molcel.2009.02.003.

13.

Pre-mRNA processing reaches back to transcription and ahead to translation.

Moore MJ, Proudfoot NJ.

Cell. 2009 Feb 20;136(4):688-700. doi: 10.1016/j.cell.2009.02.001. Review.

14.

Auto- and cross-regulation of the hnRNP L proteins by alternative splicing.

Rossbach O, Hung LH, Schreiner S, Grishina I, Heiner M, Hui J, Bindereif A.

Mol Cell Biol. 2009 Mar;29(6):1442-51. doi: 10.1128/MCB.01689-08. Epub 2009 Jan 5.

15.

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Core LJ, Waterfall JJ, Lis JT.

Science. 2008 Dec 19;322(5909):1845-8. doi: 10.1126/science.1162228. Epub 2008 Dec 4.

16.

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.

Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ.

Nat Genet. 2008 Dec;40(12):1413-5. doi: 10.1038/ng.259. Epub 2008 Nov 2. Erratum in: Nat Genet. 2009 Jun;41(6):762.

PMID:
18978789
17.

Alternative isoform regulation in human tissue transcriptomes.

Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB.

Nature. 2008 Nov 27;456(7221):470-6. doi: 10.1038/nature07509.

18.

Widespread impact of nonsense-mediated mRNA decay on the yeast intronome.

Sayani S, Janis M, Lee CY, Toesca I, Chanfreau GF.

Mol Cell. 2008 Aug 8;31(3):360-70. doi: 10.1016/j.molcel.2008.07.005.

19.

The splicing factor SC35 has an active role in transcriptional elongation.

Lin S, Coutinho-Mansfield G, Wang D, Pandit S, Fu XD.

Nat Struct Mol Biol. 2008 Aug;15(8):819-26. doi: 10.1038/nsmb.1461. Epub 2008 Jul 20.

20.

Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay.

Saltzman AL, Kim YK, Pan Q, Fagnani MM, Maquat LE, Blencowe BJ.

Mol Cell Biol. 2008 Jul;28(13):4320-30. doi: 10.1128/MCB.00361-08. Epub 2008 Apr 28.

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