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Items: 20

1.

Correlations between RNA and protein expression profiles in 23 human cell lines.

Gry M, Rimini R, Strömberg S, Asplund A, Pontén F, Uhlén M, Nilsson P.

BMC Genomics. 2009 Aug 7;10:365. doi: 10.1186/1471-2164-10-365.

2.

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

Huang da W, Sherman BT, Lempicki RA.

Nat Protoc. 2009;4(1):44-57. doi: 10.1038/nprot.2008.211.

3.

Alternative isoform regulation in human tissue transcriptomes.

Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB.

Nature. 2008 Nov 27;456(7221):470-6. doi: 10.1038/nature07509.

4.

A genecentric Human Protein Atlas for expression profiles based on antibodies.

Berglund L, Björling E, Oksvold P, Fagerberg L, Asplund A, Szigyarto CA, Persson A, Ottosson J, Wernérus H, Nilsson P, Lundberg E, Sivertsson A, Navani S, Wester K, Kampf C, Hober S, Pontén F, Uhlén M.

Mol Cell Proteomics. 2008 Oct;7(10):2019-27. doi: 10.1074/mcp.R800013-MCP200. Review.

5.

Antibodypedia, a portal for sharing antibody and antigen validation data.

Björling E, Uhlén M.

Mol Cell Proteomics. 2008 Oct;7(10):2028-37. doi: 10.1074/mcp.M800264-MCP200.

6.

Stem cell transcriptome profiling via massive-scale mRNA sequencing.

Cloonan N, Forrest AR, Kolle G, Gardiner BB, Faulkner GJ, Brown MK, Taylor DF, Steptoe AL, Wani S, Bethel G, Robertson AJ, Perkins AC, Bruce SJ, Lee CC, Ranade SS, Peckham HE, Manning JM, McKernan KJ, Grimmond SM.

Nat Methods. 2008 Jul;5(7):613-9. doi: 10.1038/nmeth.1223.

PMID:
18516046
7.

Mapping and quantifying mammalian transcriptomes by RNA-Seq.

Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B.

Nat Methods. 2008 Jul;5(7):621-8. doi: 10.1038/nmeth.1226.

PMID:
18516045
8.

The transcriptional landscape of the yeast genome defined by RNA sequencing.

Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M.

Science. 2008 Jun 6;320(5881):1344-9. doi: 10.1126/science.1158441.

9.

Correlating the transcriptome, proteome, and metabolome in the environmental adaptation of a hyperthermophile.

Trauger SA, Kalisak E, Kalisiak J, Morita H, Weinberg MV, Menon AL, Poole FL 2nd, Adams MW, Siuzdak G.

J Proteome Res. 2008 Mar;7(3):1027-35. doi: 10.1021/pr700609j.

PMID:
18247545
10.

Toward a confocal subcellular atlas of the human proteome.

Barbe L, Lundberg E, Oksvold P, Stenius A, Lewin E, Björling E, Asplund A, Pontén F, Brismar H, Uhlén M, Andersson-Svahn H.

Mol Cell Proteomics. 2008 Mar;7(3):499-508.

11.

A high-throughput strategy for protein profiling in cell microarrays using automated image analysis.

Strömberg S, Björklund MG, Asplund C, Sköllermo A, Persson A, Wester K, Kampf C, Nilsson P, Andersson AC, Uhlen M, Kononen J, Ponten F, Asplund A.

Proteomics. 2007 Jun;7(13):2142-50.

PMID:
17549799
12.

Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study.

Shankavaram UT, Reinhold WC, Nishizuka S, Major S, Morita D, Chary KK, Reimers MA, Scherf U, Kahn A, Dolginow D, Cossman J, Kaldjian EP, Scudiero DA, Petricoin E, Liotta L, Lee JK, Weinstein JN.

Mol Cancer Ther. 2007 Mar;6(3):820-32.

13.

Comparison of protein and mRNA expression evolution in humans and chimpanzees.

Fu N, Drinnenberg I, Kelso J, Wu JR, Pääbo S, Zeng R, Khaitovich P.

PLoS One. 2007 Feb 14;2(2):e216.

14.

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

Lu P, Vogel C, Wang R, Yao X, Marcotte EM.

Nat Biotechnol. 2007 Jan;25(1):117-24.

PMID:
17187058
15.

Analysis of protein expression in cell microarrays: a tool for antibody-based proteomics.

Andersson AC, Strömberg S, Bäckvall H, Kampf C, Uhlen M, Wester K, Pontén F.

J Histochem Cytochem. 2006 Dec;54(12):1413-23.

16.

Towards a human proteome atlas: high-throughput generation of mono-specific antibodies for tissue profiling.

Nilsson P, Paavilainen L, Larsson K, Odling J, Sundberg M, Andersson AC, Kampf C, Persson A, Al-Khalili Szigyarto C, Ottosson J, Björling E, Hober S, Wernérus H, Wester K, Pontén F, Uhlen M.

Proteomics. 2005 Nov;5(17):4327-37.

PMID:
16237735
17.

Comparing protein abundance and mRNA expression levels on a genomic scale.

Greenbaum D, Colangelo C, Williams K, Gerstein M.

Genome Biol. 2003;4(9):117. Review.

18.

DAVID: Database for Annotation, Visualization, and Integrated Discovery.

Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA.

Genome Biol. 2003;4(5):P3.

20.

Correlation between protein and mRNA abundance in yeast.

Gygi SP, Rochon Y, Franza BR, Aebersold R.

Mol Cell Biol. 1999 Mar;19(3):1720-30.

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