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Items: 1 to 20 of 23

1.

A discriminative approach for identifying domain-domain interactions from protein-protein interactions.

Zhao XM, Chen L, Aihara K.

Proteins. 2010 Apr;78(5):1243-53. doi: 10.1002/prot.22643.

PMID:
20027642
2.

Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks.

Liu M, Chen XW, Jothi R.

Bioinformatics. 2009 Oct 1;25(19):2492-9. doi: 10.1093/bioinformatics/btp480. Epub 2009 Aug 10.

3.

3did Update: domain-domain and peptide-mediated interactions of known 3D structure.

Stein A, Panjkovich A, Aloy P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D300-4. doi: 10.1093/nar/gkn690. Epub 2008 Oct 25.

4.

Interrogating domain-domain interactions with parsimony based approaches.

Guimarães KS, Przytycka TM.

BMC Bioinformatics. 2008 Mar 26;9:171. doi: 10.1186/1471-2105-9-171.

5.

DOMINE: a database of protein domain interactions.

Raghavachari B, Tasneem A, Przytycka TM, Jothi R.

Nucleic Acids Res. 2008 Jan;36(Database issue):D656-61. Epub 2007 Oct 2.

6.
7.

Reuse of structural domain-domain interactions in protein networks.

Schuster-Böckler B, Bateman A.

BMC Bioinformatics. 2007 Jul 18;8:259.

8.

A domain-based approach to predict protein-protein interactions.

Singhal M, Resat H.

BMC Bioinformatics. 2007 Jun 13;8:199.

9.

Predicting protein domain interactions from coevolution of conserved regions.

Kann MG, Jothi R, Cherukuri PF, Przytycka TM.

Proteins. 2007 Jun 1;67(4):811-20.

PMID:
17357158
10.

Predicting domain-domain interactions using a parsimony approach.

Guimarães KS, Jothi R, Zotenko E, Przytycka TM.

Genome Biol. 2006;7(11):R104.

11.
12.

An integrated approach to the prediction of domain-domain interactions.

Lee H, Deng M, Sun F, Chen T.

BMC Bioinformatics. 2006 May 25;7:269.

13.

Finding biologically relevant protein domain interactions: conserved binding mode analysis.

Shoemaker BA, Panchenko AR, Bryant SH.

Protein Sci. 2006 Feb;15(2):352-61. Epub 2005 Dec 29.

14.

Prediction of protein-protein interactions using random decision forest framework.

Chen XW, Liu M.

Bioinformatics. 2005 Dec 15;21(24):4394-400. Epub 2005 Oct 18.

PMID:
16234318
15.

Inferring protein domain interactions from databases of interacting proteins.

Riley R, Lee C, Sabatti C, Eisenberg D.

Genome Biol. 2005;6(10):R89. Epub 2005 Sep 19.

16.

A domain interaction map based on phylogenetic profiling.

Pagel P, Wong P, Frishman D.

J Mol Biol. 2004 Dec 10;344(5):1331-46.

PMID:
15561146
17.

Statistical analysis of domains in interacting protein pairs.

Nye TM, Berzuini C, Gilks WR, Babu MM, Teichmann SA.

Bioinformatics. 2005 Apr 1;21(7):993-1001. Epub 2004 Oct 27.

PMID:
15509600
18.

iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions.

Finn RD, Marshall M, Bateman A.

Bioinformatics. 2005 Feb 1;21(3):410-2. Epub 2004 Sep 7.

PMID:
15353450
19.

Integrative approach for computationally inferring protein domain interactions.

Ng SK, Zhang Z, Tan SH.

Bioinformatics. 2003 May 22;19(8):923-9.

PMID:
12761053
20.

Assembly of cell regulatory systems through protein interaction domains.

Pawson T, Nash P.

Science. 2003 Apr 18;300(5618):445-52. Review.

PMID:
12702867

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