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Items: 1 to 20 of 36

1.

Structural rearrangements in the active site of the Thermus thermophilus 16S rRNA methyltransferase KsgA in a binary complex with 5'-methylthioadenosine.

Demirci H, Belardinelli R, Seri E, Gregory ST, Gualerzi C, Dahlberg AE, Jogl G.

J Mol Biol. 2009 May 1;388(2):271-82. doi: 10.1016/j.jmb.2009.02.066. Epub 2009 Mar 12.

2.

Mechanistic insight into the ribosome biogenesis functions of the ancient protein KsgA.

Connolly K, Rife JP, Culver G.

Mol Microbiol. 2008 Dec;70(5):1062-75. doi: 10.1111/j.1365-2958.2008.06485.x.

3.

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding.

Kurata S, Weixlbaumer A, Ohtsuki T, Shimazaki T, Wada T, Kirino Y, Takai K, Watanabe K, Ramakrishnan V, Suzuki T.

J Biol Chem. 2008 Jul 4;283(27):18801-11. doi: 10.1074/jbc.M800233200. Epub 2008 May 2.

4.

A conserved rRNA methyltransferase regulates ribosome biogenesis.

Xu Z, O'Farrell HC, Rife JP, Culver GM.

Nat Struct Mol Biol. 2008 May;15(5):534-6. doi: 10.1038/nsmb.1408. Epub 2008 Apr 6.

PMID:
18391965
5.

The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation.

Schluenzen F, Takemoto C, Wilson DN, Kaminishi T, Harms JM, Hanawa-Suetsugu K, Szaflarski W, Kawazoe M, Shirouzu M, Nierhaus KH, Yokoyama S, Fucini P.

Nat Struct Mol Biol. 2006 Oct;13(10):871-8. Epub 2006 Sep 24. Erratum in: Nat Struct Mol Biol. 2006 Nov;13(11):1033. Shirouzo, Mikako [corrected to Shirouzu, Mikako].

PMID:
16998488
6.

Structural analysis of kasugamycin inhibition of translation.

Schuwirth BS, Day JM, Hau CW, Janssen GR, Dahlberg AE, Cate JH, Vila-Sanjurjo A.

Nat Struct Mol Biol. 2006 Oct;13(10):879-86. Epub 2006 Sep 24.

7.

The adenosine dimethyltransferase KsgA recognizes a specific conformational state of the 30S ribosomal subunit.

Desai PM, Rife JP.

Arch Biochem Biophys. 2006 May 15;449(1-2):57-63. Epub 2006 Mar 29.

PMID:
16620761
8.
9.

The Small Subunit rRNA Modification Database.

McCloskey JA, Rozenski J.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D135-8.

10.

Coot: model-building tools for molecular graphics.

Emsley P, Cowtan K.

Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32. Epub 2004 Nov 26.

PMID:
15572765
11.

The genome sequence of the extreme thermophile Thermus thermophilus.

Henne A, Brüggemann H, Raasch C, Wiezer A, Hartsch T, Liesegang H, Johann A, Lienard T, Gohl O, Martinez-Arias R, Jacobi C, Starkuviene V, Schlenczeck S, Dencker S, Huber R, Klenk HP, Kramer W, Merkl R, Gottschalk G, Fritz HJ.

Nat Biotechnol. 2004 May;22(5):547-53. Epub 2004 Apr 4.

PMID:
15064768
12.

Selection of tRNA by the ribosome requires a transition from an open to a closed form.

Ogle JM, Murphy FV, Tarry MJ, Ramakrishnan V.

Cell. 2002 Nov 27;111(5):721-32.

13.

PHENIX: building new software for automated crystallographic structure determination.

Adams PD, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Terwilliger TC.

Acta Crystallogr D Biol Crystallogr. 2002 Nov;58(Pt 11):1948-54. Epub 2002 Oct 21.

PMID:
12393927
14.

Interconversions between inactive and active forms of ribosomal subunits.

Zamir A, Miskin R, Elson D.

FEBS Lett. 1969 Apr;3(1):85-88. No abstract available.

15.

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.

Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, Du Y, Feng B, Lin N, Madabusi LV, Müller KM, Pande N, Shang Z, Yu N, Gutell RR.

BMC Bioinformatics. 2002;3:2. Epub 2002 Jan 17. Erratum in: BMC Bioinformatics. 2002 Jul;3(1):15.

16.

Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: purification, crystallization and structure determination.

Clemons WM Jr, Brodersen DE, McCutcheon JP, May JL, Carter AP, Morgan-Warren RJ, Wimberly BT, Ramakrishnan V.

J Mol Biol. 2001 Jul 20;310(4):827-43.

PMID:
11453691
17.

Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Ogle JM, Brodersen DE, Clemons WM Jr, Tarry MJ, Carter AP, Ramakrishnan V.

Science. 2001 May 4;292(5518):897-902.

19.

Structure of the 30S ribosomal subunit.

Wimberly BT, Brodersen DE, Clemons WM Jr, Morgan-Warren RJ, Carter AP, Vonrhein C, Hartsch T, Ramakrishnan V.

Nature. 2000 Sep 21;407(6802):327-39.

PMID:
11014182
20.

Isolation of kasugamycin resistant mutants in the 16 S ribosomal RNA of Escherichia coli.

Vila-Sanjurjo A, Squires CL, Dahlberg AE.

J Mol Biol. 1999 Oct 15;293(1):1-8.

PMID:
10512710

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