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Items: 1 to 20 of 44

1.

A human gut microbial gene catalogue established by metagenomic sequencing.

Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto JM, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P, Sicheritz-Ponten T, Turner K, Zhu H, Yu C, Li S, Jian M, Zhou Y, Li Y, Zhang X, Li S, Qin N, Yang H, Wang J, Brunak S, Doré J, Guarner F, Kristiansen K, Pedersen O, Parkhill J, Weissenbach J; MetaHIT Consortium., Bork P, Ehrlich SD, Wang J.

Nature. 2010 Mar 4;464(7285):59-65. doi: 10.1038/nature08821.

2.

Immune adaptations that maintain homeostasis with the intestinal microbiota.

Hooper LV, Macpherson AJ.

Nat Rev Immunol. 2010 Mar;10(3):159-69. doi: 10.1038/nri2710. Review.

PMID:
20182457
3.
4.

The role of infection in the aetiology of inflammatory bowel disease.

Hansen R, Thomson JM, El-Omar EM, Hold GL.

J Gastroenterol. 2010 Mar;45(3):266-76. doi: 10.1007/s00535-009-0191-y. Review.

PMID:
20076977
5.

Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis.

Hill DA, Hoffmann C, Abt MC, Du Y, Kobuley D, Kirn TJ, Bushman FD, Artis D.

Mucosal Immunol. 2010 Mar;3(2):148-58. doi: 10.1038/mi.2009.132.

6.

Maintaining diplomatic relations between mammals and beneficial microbial communities.

Hill DA, Artis D.

Sci Signal. 2009 Nov 24;2(98):pe77. doi: 10.1126/scisignal.298pe77.

7.

Joint extraintestinal manifestations in ulcerative colitis.

Dorofeyev AE, Vasilenko IV, Rassokhina OA.

Dig Dis. 2009;27(4):502-10. doi: 10.1159/000233289.

PMID:
19897966
8.

Immune responses to the microbiota at the intestinal mucosal surface.

Duerkop BA, Vaishnava S, Hooper LV.

Immunity. 2009 Sep 18;31(3):368-76. doi: 10.1016/j.immuni.2009.08.009. Review.

9.

Colitis-associated colorectal cancer driven by T-bet deficiency in dendritic cells.

Garrett WS, Punit S, Gallini CA, Michaud M, Zhang D, Sigrist KS, Lord GM, Glickman JN, Glimcher LH.

Cancer Cell. 2009 Sep 8;16(3):208-19. doi: 10.1016/j.ccr.2009.07.015.

10.

Microbial-host interactions in inflammatory bowel diseases and experimental colitis.

Sartor RB.

Nestle Nutr Workshop Ser Pediatr Program. 2009;64:121-32; discussion 132-7, 251-7. doi: 10.1159/000235787.

PMID:
19710519
11.

Community-wide response of the gut microbiota to enteropathogenic Citrobacter rodentium infection revealed by deep sequencing.

Hoffmann C, Hill DA, Minkah N, Kirn T, Troy A, Artis D, Bushman F.

Infect Immun. 2009 Oct;77(10):4668-78. doi: 10.1128/IAI.00493-09.

12.

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix.

Price MN, Dehal PS, Arkin AP.

Mol Biol Evol. 2009 Jul;26(7):1641-50. doi: 10.1093/molbev/msp077.

13.

Regulatory lymphocytes and intestinal inflammation.

Izcue A, Coombes JL, Powrie F.

Annu Rev Immunol. 2009;27:313-38. doi: 10.1146/annurev.immunol.021908.132657. Review.

PMID:
19302043
14.

A core gut microbiome in obese and lean twins.

Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI.

Nature. 2009 Jan 22;457(7228):480-4. doi: 10.1038/nature07540.

15.

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing.

Dethlefsen L, Huse S, Sogin ML, Relman DA.

PLoS Biol. 2008 Nov 18;6(11):e280. doi: 10.1371/journal.pbio.0060280.

16.

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis.

Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM.

Nucleic Acids Res. 2009 Jan;37(Database issue):D141-5. doi: 10.1093/nar/gkn879.

17.

Host and microbiota factors that control Klebsiella pneumoniae mucosal colonization in mice.

Lau HY, Huffnagle GB, Moore TA.

Microbes Infect. 2008 Oct;10(12-13):1283-90. doi: 10.1016/j.micinf.2008.07.040.

18.

The biology of intestinal immunoglobulin A responses.

Cerutti A, Rescigno M.

Immunity. 2008 Jun;28(6):740-50. doi: 10.1016/j.immuni.2008.05.001. Review.

19.

Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases.

Peterson DA, Frank DN, Pace NR, Gordon JI.

Cell Host Microbe. 2008 Jun 12;3(6):417-27. doi: 10.1016/j.chom.2008.05.001. Review.

20.

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex.

Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R.

Nat Methods. 2008 Mar;5(3):235-7. doi: 10.1038/nmeth.1184.

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