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Items: 1 to 20 of 41

1.

Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway.

Ghildiyal M, Xu J, Seitz H, Weng Z, Zamore PD.

RNA. 2010 Jan;16(1):43-56. doi: 10.1261/rna.1972910. Epub 2009 Nov 16.

2.

Hierarchical rules for Argonaute loading in Drosophila.

Czech B, Zhou R, Erlich Y, Brennecke J, Binari R, Villalta C, Gordon A, Perrimon N, Hannon GJ.

Mol Cell. 2009 Nov 13;36(3):445-56. doi: 10.1016/j.molcel.2009.09.028.

3.

Distinct mechanisms for microRNA strand selection by Drosophila Argonautes.

Okamura K, Liu N, Lai EC.

Mol Cell. 2009 Nov 13;36(3):431-44. doi: 10.1016/j.molcel.2009.09.027.

4.

Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells.

Mayr C, Bartel DP.

Cell. 2009 Aug 21;138(4):673-84. doi: 10.1016/j.cell.2009.06.016.

5.

Identification of the human mature B cell miRNome.

Basso K, Sumazin P, Morozov P, Schneider C, Maute RL, Kitagawa Y, Mandelbaum J, Haddad J Jr, Chen CZ, Califano A, Dalla-Favera R.

Immunity. 2009 May;30(5):744-52. doi: 10.1016/j.immuni.2009.03.017. Epub 2009 May 14.

6.

Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries.

Wyman SK, Parkin RK, Mitchell PS, Fritz BR, O'Briant K, Godwin AK, Urban N, Drescher CW, Knudsen BS, Tewari M.

PLoS One. 2009;4(4):e5311. doi: 10.1371/journal.pone.0005311. Epub 2009 Apr 23.

7.

Differential efficacy of bortezomib plus chemotherapy within molecular subtypes of diffuse large B-cell lymphoma.

Dunleavy K, Pittaluga S, Czuczman MS, Dave SS, Wright G, Grant N, Shovlin M, Jaffe ES, Janik JE, Staudt LM, Wilson WH.

Blood. 2009 Jun 11;113(24):6069-76. doi: 10.1182/blood-2009-01-199679. Epub 2009 Apr 20.

8.

Tiny RNAs associated with transcription start sites in animals.

Taft RJ, Glazov EA, Cloonan N, Simons C, Stephen S, Faulkner GJ, Lassmann T, Forrest AR, Grimmond SM, Schroder K, Irvine K, Arakawa T, Nakamura M, Kubosaki A, Hayashida K, Kawazu C, Murata M, Nishiyori H, Fukuda S, Kawai J, Daub CO, Hume DA, Suzuki H, Orlando V, Carninci P, Hayashizaki Y, Mattick JS.

Nat Genet. 2009 May;41(5):572-8. doi: 10.1038/ng.312. Epub 2009 Apr 19. Erratum in: Nat Genet. 2009 Jul;41(7):859.

PMID:
19377478
9.

Patterns of microRNA expression characterize stages of human B-cell differentiation.

Zhang J, Jima DD, Jacobs C, Fischer R, Gottwein E, Huang G, Lugar PL, Lagoo AS, Rizzieri DA, Friedman DR, Weinberg JB, Lipsky PE, Dave SS.

Blood. 2009 May 7;113(19):4586-94. doi: 10.1182/blood-2008-09-178186. Epub 2009 Feb 6.

10.

Differentiation stage-specific expression of microRNAs in B lymphocytes and diffuse large B-cell lymphomas.

Malumbres R, Sarosiek KA, Cubedo E, Ruiz JW, Jiang X, Gascoyne RD, Tibshirani R, Lossos IS.

Blood. 2009 Apr 16;113(16):3754-64. doi: 10.1182/blood-2008-10-184077. Epub 2008 Dec 1.

11.

Stromal gene signatures in large-B-cell lymphomas.

Lenz G, Wright G, Dave SS, Xiao W, Powell J, Zhao H, Xu W, Tan B, Goldschmidt N, Iqbal J, Vose J, Bast M, Fu K, Weisenburger DD, Greiner TC, Armitage JO, Kyle A, May L, Gascoyne RD, Connors JM, Troen G, Holte H, Kvaloy S, Dierickx D, Verhoef G, Delabie J, Smeland EB, Jares P, Martinez A, Lopez-Guillermo A, Montserrat E, Campo E, Braziel RM, Miller TP, Rimsza LM, Cook JR, Pohlman B, Sweetenham J, Tubbs RR, Fisher RI, Hartmann E, Rosenwald A, Ott G, Muller-Hermelink HK, Wrench D, Lister TA, Jaffe ES, Wilson WH, Chan WC, Staudt LM; Lymphoma/Leukemia Molecular Profiling Project..

N Engl J Med. 2008 Nov 27;359(22):2313-23. doi: 10.1056/NEJMoa0802885.

12.

GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis.

Zheng Q, Wang XJ.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W358-63. doi: 10.1093/nar/gkn276. Epub 2008 May 16.

13.

MicroRNA expression in cytogenetically normal acute myeloid leukemia.

Marcucci G, Radmacher MD, Maharry K, Mrózek K, Ruppert AS, Paschka P, Vukosavljevic T, Whitman SP, Baldus CD, Langer C, Liu CG, Carroll AJ, Powell BL, Garzon R, Croce CM, Kolitz JE, Caligiuri MA, Larson RA, Bloomfield CD.

N Engl J Med. 2008 May 1;358(18):1919-28. doi: 10.1056/NEJMoa074256.

14.

Discovering microRNAs from deep sequencing data using miRDeep.

Friedländer MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N.

Nat Biotechnol. 2008 Apr;26(4):407-15. doi: 10.1038/nbt1394.

PMID:
18392026
15.

Targeted deletion reveals essential and overlapping functions of the miR-17 through 92 family of miRNA clusters.

Ventura A, Young AG, Winslow MM, Lintault L, Meissner A, Erkeland SJ, Newman J, Bronson RT, Crowley D, Stone JR, Jaenisch R, Sharp PA, Jacks T.

Cell. 2008 Mar 7;132(5):875-86. doi: 10.1016/j.cell.2008.02.019.

16.

Lymphoproliferative disease and autoimmunity in mice with increased miR-17-92 expression in lymphocytes.

Xiao C, Srinivasan L, Calado DP, Patterson HC, Zhang B, Wang J, Henderson JM, Kutok JL, Rajewsky K.

Nat Immunol. 2008 Apr;9(4):405-14. doi: 10.1038/ni1575. Epub 2008 Mar 9.

17.

A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas.

Mani KM, Lefebvre C, Wang K, Lim WK, Basso K, Dalla-Favera R, Califano A.

Mol Syst Biol. 2008;4:169. doi: 10.1038/msb.2008.2. Epub 2008 Feb 12.

18.

miRBase: tools for microRNA genomics.

Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. Epub 2007 Nov 8.

19.

Systematic analysis of microRNA expression of RNA extracted from fresh frozen and formalin-fixed paraffin-embedded samples.

Xi Y, Nakajima G, Gavin E, Morris CG, Kudo K, Hayashi K, Ju J.

RNA. 2007 Oct;13(10):1668-74. Epub 2007 Aug 13.

20.

A mammalian microRNA expression atlas based on small RNA library sequencing.

Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foà R, Schliwka J, Fuchs U, Novosel A, Müller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G, Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T.

Cell. 2007 Jun 29;129(7):1401-14.

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