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Items: 1 to 20 of 64

1.

Similarly strong purifying selection acts on human disease genes of all evolutionary ages.

Cai JJ, Borenstein E, Chen R, Petrov DA.

Genome Biol Evol. 2009 May 27;1:131-44. doi: 10.1093/gbe/evp013.

2.

Emergence of a new gene from an intergenic region.

Heinen TJ, Staubach F, Häming D, Tautz D.

Curr Biol. 2009 Sep 29;19(18):1527-31. doi: 10.1016/j.cub.2009.07.049. Epub 2009 Sep 3.

3.

Recent de novo origin of human protein-coding genes.

Knowles DG, McLysaght A.

Genome Res. 2009 Oct;19(10):1752-9. doi: 10.1101/gr.095026.109. Epub 2009 Sep 2.

4.

More than just orphans: are taxonomically-restricted genes important in evolution?

Khalturin K, Hemmrich G, Fraune S, Augustin R, Bosch TC.

Trends Genet. 2009 Sep;25(9):404-13. doi: 10.1016/j.tig.2009.07.006. Epub 2009 Aug 27. Review.

PMID:
19716618
5.

Evolution of primate orphan proteins.

Toll-Riera M, Castelo R, Bellora N, Albà MM.

Biochem Soc Trans. 2009 Aug;37(Pt 4):778-82. doi: 10.1042/BST0370778. Review.

PMID:
19614593
6.

Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change.

Eyre-Walker A, Keightley PD.

Mol Biol Evol. 2009 Sep;26(9):2097-108. doi: 10.1093/molbev/msp119. Epub 2009 Jun 17.

PMID:
19535738
7.

Relationship between phylogenetic distribution and genomic features in Neurospora crassa.

Kasuga T, Mannhaupt G, Glass NL.

PLoS One. 2009 Apr 21;4(4):e5286. doi: 10.1371/journal.pone.0005286.

8.

MBEToolbox 2.0: an enhanced version of a MATLAB toolbox for molecular biology and evolution.

Cai JJ, Smith DK, Xia X, Yuen KY.

Evol Bioinform Online. 2007 Feb 6;2:179-82.

9.

The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages.

Wolf YI, Novichkov PS, Karev GP, Koonin EV, Lipman DJ.

Proc Natl Acad Sci U S A. 2009 May 5;106(18):7273-80. doi: 10.1073/pnas.0901808106. Epub 2009 Apr 7.

10.

Origin of primate orphan genes: a comparative genomics approach.

Toll-Riera M, Bosch N, Bellora N, Castelo R, Armengol L, Estivill X, Albà MM.

Mol Biol Evol. 2009 Mar;26(3):603-12. doi: 10.1093/molbev/msn281. Epub 2008 Dec 8.

PMID:
19064677
11.

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates.

Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, Birney E.

Genome Res. 2009 Feb;19(2):327-35. doi: 10.1101/gr.073585.107. Epub 2008 Nov 24.

12.

An ancient evolutionary origin of genes associated with human genetic diseases.

Domazet-Loso T, Tautz D.

Mol Biol Evol. 2008 Dec;25(12):2699-707. doi: 10.1093/molbev/msn214. Epub 2008 Sep 26.

13.

"Reverse ecology" and the power of population genomics.

Li YF, Costello JC, Holloway AK, Hahn MW.

Evolution. 2008 Dec;62(12):2984-94. doi: 10.1111/j.1558-5646.2008.00486.x. Epub 2008 Aug 26.

14.
15.

Broad phylogenomic sampling improves resolution of the animal tree of life.

Dunn CW, Hejnol A, Matus DQ, Pang K, Browne WE, Smith SA, Seaver E, Rouse GW, Obst M, Edgecombe GD, Sørensen MV, Haddock SH, Schmidt-Rhaesa A, Okusu A, Kristensen RM, Wheeler WC, Martindale MQ, Giribet G.

Nature. 2008 Apr 10;452(7188):745-9. doi: 10.1038/nature06614. Epub 2008 Mar 5.

PMID:
18322464
16.

PGEToolbox: A Matlab toolbox for population genetics and evolution.

Cai JJ.

J Hered. 2008 Jul-Aug;99(4):438-40. doi: 10.1093/jhered/esm127. Epub 2008 Feb 29.

PMID:
18310616
17.

Proportionally more deleterious genetic variation in European than in African populations.

Lohmueller KE, Indap AR, Schmidt S, Boyko AR, Hernandez RD, Hubisz MJ, Sninsky JJ, White TJ, Sunyaev SR, Nielsen R, Clark AG, Bustamante CD.

Nature. 2008 Feb 21;451(7181):994-7. doi: 10.1038/nature06611.

18.

InParanoid 6: eukaryotic ortholog clusters with inparalogs.

Berglund AC, Sjölund E, Ostlund G, Sonnhammer EL.

Nucleic Acids Res. 2008 Jan;36(Database issue):D263-6. Epub 2007 Nov 30.

19.

A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages.

Domazet-Loso T, Brajković J, Tautz D.

Trends Genet. 2007 Nov;23(11):533-9.

PMID:
18029048
20.

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