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Items: 1 to 20 of 47

1.

Mammalian polyamine metabolism and function.

Pegg AE.

IUBMB Life. 2009 Sep;61(9):880-94. doi: 10.1002/iub.230. Review.

2.

Expression and purification of recombinant arginine decarboxylase (speA) from Escherichia coli.

Song J, Zhou C, Liu R, Wu X, Wu D, Hu X, Ding Y.

Mol Biol Rep. 2010 Apr;37(4):1823-9. doi: 10.1007/s11033-009-9617-0. Epub 2009 Jul 15.

PMID:
19603287
3.

The three-dimensional structure of diaminopimelate decarboxylase from Mycobacterium tuberculosis reveals a tetrameric enzyme organisation.

Weyand S, Kefala G, Svergun DI, Weiss MS.

J Struct Funct Genomics. 2009 Sep;10(3):209-17. doi: 10.1007/s10969-009-9065-z. Epub 2009 Jun 19.

PMID:
19543810
4.

Crystal structure of the acid-induced arginine decarboxylase from Escherichia coli: reversible decamer assembly controls enzyme activity.

Andréll J, Hicks MG, Palmer T, Carpenter EP, Iwata S, Maher MJ.

Biochemistry. 2009 May 12;48(18):3915-27. doi: 10.1021/bi900075d.

PMID:
19298070
5.

Preliminary X-ray crystallographic studies of Bacillus subtilis SpeA protein.

Liu XY, Lei J, Liu X, Su XD, Li L.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Mar 1;65(Pt 3):282-4. doi: 10.1107/S1744309109003856. Epub 2009 Feb 26.

6.

An alternative polyamine biosynthetic pathway is widespread in bacteria and essential for biofilm formation in Vibrio cholerae.

Lee J, Sperandio V, Frantz DE, Longgood J, Camilli A, Phillips MA, Michael AJ.

J Biol Chem. 2009 Apr 10;284(15):9899-907. doi: 10.1074/jbc.M900110200. Epub 2009 Feb 5.

7.

PROMALS3D web server for accurate multiple protein sequence and structure alignments.

Pei J, Tang M, Grishin NV.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W30-4. doi: 10.1093/nar/gkn322. Epub 2008 May 24.

8.

Detecting folding motifs and similarities in protein structures.

Kleywegt GJ, Jones TA.

Methods Enzymol. 1997;277:525-45. No abstract available.

PMID:
18488323
9.

Crystallographic and biochemical studies revealing the structural basis for antizyme inhibitor function.

Albeck S, Dym O, Unger T, Snapir Z, Bercovich Z, Kahana C.

Protein Sci. 2008 May;17(5):793-802. doi: 10.1110/ps.073427208. Epub 2008 Mar 27.

10.

PROMALS3D: a tool for multiple protein sequence and structure alignments.

Pei J, Kim BH, Grishin NV.

Nucleic Acids Res. 2008 Apr;36(7):2295-300. doi: 10.1093/nar/gkn072. Epub 2008 Feb 20.

11.

Phylogenetic diversity and the structural basis of substrate specificity in the beta/alpha-barrel fold basic amino acid decarboxylases.

Lee J, Michael AJ, Martynowski D, Goldsmith EJ, Phillips MA.

J Biol Chem. 2007 Sep 14;282(37):27115-25. Epub 2007 Jul 11.

12.

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.

Davis IW, Leaver-Fay A, Chen VB, Block JN, Kapral GJ, Wang X, Murray LW, Arendall WB 3rd, Snoeyink J, Richardson JS, Richardson DC.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W375-83. Epub 2007 Apr 22.

13.

Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature.

Laskowski RA.

Bioinformatics. 2007 Jul 15;23(14):1824-7. Epub 2007 Mar 24.

PMID:
17384425
14.

X-ray structure of Paramecium bursaria Chlorella virus arginine decarboxylase: insight into the structural basis for substrate specificity.

Shah R, Akella R, Goldsmith EJ, Phillips MA.

Biochemistry. 2007 Mar 13;46(10):2831-41. Epub 2007 Feb 17.

15.

Knowledge-based potentials in protein design.

Poole AM, Ranganathan R.

Curr Opin Struct Biol. 2006 Aug;16(4):508-13. Epub 2006 Jul 14. Review.

PMID:
16843652
16.

Polyamines are essential for the formation of plague biofilm.

Patel CN, Wortham BW, Lines JL, Fetherston JD, Perry RD, Oliveira MA.

J Bacteriol. 2006 Apr;188(7):2355-63.

17.

Crystallization, X-ray diffraction and oligomeric characterization of arginine decarboxylase from Yersinia pestis, a key polyamine biosynthetic enzyme.

Patel CN, Adcock RS, Sell KG, Oliveira MA.

Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 2):2396-8. Epub 2004 Nov 26.

PMID:
15583399
18.

Coot: model-building tools for molecular graphics.

Emsley P, Cowtan K.

Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32. Epub 2004 Nov 26.

PMID:
15572765
19.

Multiple active site conformations revealed by distant site mutation in ornithine decarboxylase.

Jackson LK, Baldwin J, Akella R, Goldsmith EJ, Phillips MA.

Biochemistry. 2004 Oct 19;43(41):12990-9.

PMID:
15476392
20.

Refinement of macromolecular structures by the maximum-likelihood method.

Murshudov GN, Vagin AA, Dodson EJ.

Acta Crystallogr D Biol Crystallogr. 1997 May 1;53(Pt 3):240-55.

PMID:
15299926

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