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Items: 1 to 20 of 37

1.

Supervised prediction of drug-target interactions using bipartite local models.

Bleakley K, Yamanishi Y.

Bioinformatics. 2009 Sep 15;25(18):2397-403. doi: 10.1093/bioinformatics/btp433. Epub 2009 Jul 15.

2.

Mapping adverse drug reactions in chemical space.

Scheiber J, Jenkins JL, Sukuru SC, Bender A, Mikhailov D, Milik M, Azzaoui K, Whitebread S, Hamon J, Urban L, Glick M, Davies JW.

J Med Chem. 2009 May 14;52(9):3103-7. doi: 10.1021/jm801546k.

PMID:
19378990
3.

Protein-ligand interaction prediction: an improved chemogenomics approach.

Jacob L, Vert JP.

Bioinformatics. 2008 Oct 1;24(19):2149-56. doi: 10.1093/bioinformatics/btn409. Epub 2008 Aug 1.

4.

Drug target identification using side-effect similarity.

Campillos M, Kuhn M, Gavin AC, Jensen LJ, Bork P.

Science. 2008 Jul 11;321(5886):263-6. doi: 10.1126/science.1158140.

5.

Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.

Yamanishi Y, Araki M, Gutteridge A, Honda W, Kanehisa M.

Bioinformatics. 2008 Jul 1;24(13):i232-40. doi: 10.1093/bioinformatics/btn162.

6.

KEGG for linking genomes to life and the environment.

Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y.

Nucleic Acids Res. 2008 Jan;36(Database issue):D480-4. Epub 2007 Dec 12.

7.

Injectable actarit-loaded solid lipid nanoparticles as passive targeting therapeutic agents for rheumatoid arthritis.

Ye J, Wang Q, Zhou X, Zhang N.

Int J Pharm. 2008 Mar 20;352(1-2):273-9. Epub 2007 Oct 22.

PMID:
18054182
8.

DrugBank: a knowledgebase for drugs, drug actions and drug targets.

Wishart DS, Knox C, Guo AC, Cheng D, Shrivastava S, Tzur D, Gautam B, Hassanali M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D901-6. Epub 2007 Nov 29.

9.

Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor.

Faulon JL, Misra M, Martin S, Sale K, Sapra R.

Bioinformatics. 2008 Jan 15;24(2):225-33. Epub 2007 Nov 23.

PMID:
18037612
10.

SuperTarget and Matador: resources for exploring drug-target relationships.

Günther S, Kuhn M, Dunkel M, Campillos M, Senger C, Petsalaki E, Ahmed J, Urdiales EG, Gewiess A, Jensen LJ, Schneider R, Skoblo R, Russell RB, Bourne PE, Bork P, Preissner R.

Nucleic Acids Res. 2008 Jan;36(Database issue):D919-22. Epub 2007 Oct 16.

11.

Drug-target network.

Yildirim MA, Goh KI, Cusick ME, Barabási AL, Vidal M.

Nat Biotechnol. 2007 Oct;25(10):1119-26.

PMID:
17921997
12.

Statistical prediction of protein chemical interactions based on chemical structure and mass spectrometry data.

Nagamine N, Sakakibara Y.

Bioinformatics. 2007 Aug 1;23(15):2004-12. Epub 2007 May 17.

PMID:
17510168
13.

An open-label adrenal suppression study of 0.1% fluocinonide cream in pediatric patients with atopic dermatitis.

Schlessinger J, Miller B, Gilbert RD, Plott RT; Vanos Study Group.

Arch Dermatol. 2006 Dec;142(12):1568-72.

PMID:
17178982
14.

Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching.

Gribskov M, Robinson NL.

Comput Chem. 1996 Mar;20(1):25-33.

PMID:
16718863
15.

Collaborative filtering on a family of biological targets.

Erhan D, L'heureux PJ, Yue SY, Bengio Y.

J Chem Inf Model. 2006 Mar-Apr;46(2):626-35.

PMID:
16562992
16.

From genomics to chemical genomics: new developments in KEGG.

Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D354-7.

17.

Virtual screen for ligands of orphan G protein-coupled receptors.

Bock JR, Gough DA.

J Chem Inf Model. 2005 Sep-Oct;45(5):1402-14.

PMID:
16180917
18.

Chemical space and biology.

Dobson CM.

Nature. 2004 Dec 16;432(7019):824-8.

PMID:
15602547
19.

BRENDA, the enzyme database: updates and major new developments.

Schomburg I, Chang A, Ebeling C, Gremse M, Heldt C, Huhn G, Schomburg D.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D431-3.

20.

Comparison of support vector machine and artificial neural network systems for drug/nondrug classification.

Byvatov E, Fechner U, Sadowski J, Schneider G.

J Chem Inf Comput Sci. 2003 Nov-Dec;43(6):1882-9.

PMID:
14632437

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