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Items: 1 to 20 of 111


Establishing, maintaining and modifying DNA methylation patterns in plants and animals.

Law JA, Jacobsen SE.

Nat Rev Genet. 2010 Mar;11(3):204-20. doi: 10.1038/nrg2719. Review.


Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution.

Gu H, Bock C, Mikkelsen TS, J├Ąger N, Smith ZD, Tomazou E, Gnirke A, Lander ES, Meissner A.

Nat Methods. 2010 Feb;7(2):133-6. doi: 10.1038/nmeth.1414. Epub 2010 Jan 10.


CpG_MI: a novel approach for identifying functional CpG islands in mammalian genomes.

Su J, Zhang Y, Lv J, Liu H, Tang X, Wang F, Qi Y, Feng Y, Li X.

Nucleic Acids Res. 2010 Jan;38(1):e6. doi: 10.1093/nar/gkp882. Epub 2009 Oct 23.


Detection of MGMT promoter methylation in normal individuals is strongly associated with the T allele of the rs16906252 MGMT promoter single nucleotide polymorphism.

Candiloro IL, Dobrovic A.

Cancer Prev Res (Phila). 2009 Oct;2(10):862-7. doi: 10.1158/1940-6207.CAPR-09-0056. Epub 2009 Sep 29.


Predictable suppression of gene expression by 5'-UTR-based RNA quadruplexes.

Halder K, Wieland M, Hartig JS.

Nucleic Acids Res. 2009 Nov;37(20):6811-7. doi: 10.1093/nar/gkp696. Epub 2009 Sep 9.


Biomarkers in psychiatry.

Singh I, Rose N.

Nature. 2009 Jul 9;460(7252):202-7. doi: 10.1038/460202a. No abstract available.


A rare nucleotide base tautomer in the structure of an asymmetric DNA junction.

Khuu P, Ho PS.

Biochemistry. 2009 Aug 25;48(33):7824-32. doi: 10.1021/bi900829b.


DNA methylation-histone modification relationships across the desmin locus in human primary cells.

Lindahl Allen M, Koch CM, Clelland GK, Dunham I, Antoniou M.

BMC Mol Biol. 2009 May 27;10:51. doi: 10.1186/1471-2199-10-51.


Profile analysis and prediction of tissue-specific CpG island methylation classes.

Previti C, Harari O, Zwir I, del Val C.

BMC Bioinformatics. 2009 Apr 21;10:116. doi: 10.1186/1471-2105-10-116.


Developmental programming of CpG island methylation profiles in the human genome.

Straussman R, Nejman D, Roberts D, Steinfeld I, Blum B, Benvenisty N, Simon I, Yakhini Z, Cedar H.

Nat Struct Mol Biol. 2009 May;16(5):564-71. doi: 10.1038/nsmb.1594. Epub 2009 Apr 19.


Direct experimental evidence for quadruplex-quadruplex interaction within the human ILPR.

Schonhoft JD, Bajracharya R, Dhakal S, Yu Z, Mao H, Basu S.

Nucleic Acids Res. 2009 Jun;37(10):3310-20. doi: 10.1093/nar/gkp181. Epub 2009 Mar 25.


Gene regulation by methylation.

Mueller WC, von Deimling A.

Recent Results Cancer Res. 2009;171:217-39. doi: 10.1007/978-3-540-31206-2_13. Review.


Interaction of prenatal exposure to cigarettes and MAOA genotype in pathways to youth antisocial behavior.

Wakschlag LS, Kistner EO, Pine DS, Biesecker G, Pickett KE, Skol AD, Dukic V, Blair RJ, Leventhal BL, Cox NJ, Burns JL, Kasza KE, Wright RJ, Cook EH Jr.

Mol Psychiatry. 2010 Sep;15(9):928-37. doi: 10.1038/mp.2009.22. Epub 2009 Mar 3.


CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome?

Han L, Zhao Z.

BMC Bioinformatics. 2009 Feb 20;10:65. doi: 10.1186/1471-2105-10-65.


Nucleosome positioning and gene regulation: advances through genomics.

Jiang C, Pugh BF.

Nat Rev Genet. 2009 Mar;10(3):161-72. doi: 10.1038/nrg2522. Review.


Mining knowledge for the methylation status of CpG islands using alternating decision trees.

Carson MB, Langlois R, Lu H.

Conf Proc IEEE Eng Med Biol Soc. 2008;2008:3787-90. doi: 10.1109/IEMBS.2008.4650033.


The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores.

Irizarry RA, Ladd-Acosta C, Wen B, Wu Z, Montano C, Onyango P, Cui H, Gabo K, Rongione M, Webster M, Ji H, Potash JB, Sabunciyan S, Feinberg AP.

Nat Genet. 2009 Feb;41(2):178-86. doi: 10.1038/ng.298. Epub 2009 Jan 18.


Nucleosome DNA bendability matrix (C. elegans).

Gabdank I, Barash D, Trifonov EN.

J Biomol Struct Dyn. 2009 Feb;26(4):403-11.


Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

Valen E, Pascarella G, Chalk A, Maeda N, Kojima M, Kawazu C, Murata M, Nishiyori H, Lazarevic D, Motti D, Marstrand TT, Tang MH, Zhao X, Krogh A, Winther O, Arakawa T, Kawai J, Wells C, Daub C, Harbers M, Hayashizaki Y, Gustincich S, Sandelin A, Carninci P.

Genome Res. 2009 Feb;19(2):255-65. doi: 10.1101/gr.084541.108. Epub 2008 Dec 11.


Highly individual methylation patterns of alternative glucocorticoid receptor promoters suggest individualized epigenetic regulatory mechanisms.

Turner JD, Pelascini LP, Macedo JA, Muller CP.

Nucleic Acids Res. 2008 Dec;36(22):7207-18. doi: 10.1093/nar/gkn897. Epub 2008 Nov 12.

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