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Items: 1 to 20 of 70

1.

The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages.

Wolf YI, Novichkov PS, Karev GP, Koonin EV, Lipman DJ.

Proc Natl Acad Sci U S A. 2009 May 5;106(18):7273-80. doi: 10.1073/pnas.0901808106. Epub 2009 Apr 7.

2.

BioMart--biological queries made easy.

Smedley D, Haider S, Ballester B, Holland R, London D, Thorisson G, Kasprzyk A.

BMC Genomics. 2009 Jan 14;10:22. doi: 10.1186/1471-2164-10-22.

3.

Origin of primate orphan genes: a comparative genomics approach.

Toll-Riera M, Bosch N, Bellora N, Castelo R, Armengol L, Estivill X, Albà MM.

Mol Biol Evol. 2009 Mar;26(3):603-12. doi: 10.1093/molbev/msn281. Epub 2008 Dec 8.

PMID:
19064677
4.

FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease.

Chen R, Morgan AA, Dudley J, Deshpande T, Li L, Kodama K, Chiang AP, Butte AJ.

Genome Biol. 2008;9(12):R170. doi: 10.1186/gb-2008-9-12-r170. Epub 2008 Dec 5.

5.

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates.

Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, Birney E.

Genome Res. 2009 Feb;19(2):327-35. doi: 10.1101/gr.073585.107. Epub 2008 Nov 24.

6.

PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood.

Hulsen T, Groenen PM, de Vlieg J, Alkema W.

Nucleic Acids Res. 2009 Jan;37(Database issue):D731-7. doi: 10.1093/nar/gkn645. Epub 2008 Oct 2.

7.

An ancient evolutionary origin of genes associated with human genetic diseases.

Domazet-Loso T, Tautz D.

Mol Biol Evol. 2008 Dec;25(12):2699-707. doi: 10.1093/molbev/msn214. Epub 2008 Sep 26.

8.

Pervasive and persistent redundancy among duplicated genes in yeast.

Dean EJ, Davis JC, Davis RW, Petrov DA.

PLoS Genet. 2008 Jul 4;4(7):e1000113. doi: 10.1371/journal.pgen.1000113.

9.

Natural selection on genes that underlie human disease susceptibility.

Blekhman R, Man O, Herrmann L, Boyko AR, Indap A, Kosiol C, Bustamante CD, Teshima KM, Przeworski M.

Curr Biol. 2008 Jun 24;18(12):883-9. doi: 10.1016/j.cub.2008.04.074.

10.
11.

Natural selection of protein structural and functional properties: a single nucleotide polymorphism perspective.

Liu J, Zhang Y, Lei X, Zhang Z.

Genome Biol. 2008 Apr 8;9(4):R69. doi: 10.1186/gb-2008-9-4-r69.

12.

Walking the interactome for prioritization of candidate disease genes.

Köhler S, Bauer S, Horn D, Robinson PN.

Am J Hum Genet. 2008 Apr;82(4):949-58. doi: 10.1016/j.ajhg.2008.02.013. Epub 2008 Mar 27.

13.

Role of duplicate genes in robustness against deleterious human mutations.

Hsiao TL, Vitkup D.

PLoS Genet. 2008 Mar 14;4(3):e1000014. doi: 10.1371/journal.pgen.1000014.

14.

Gene duplications, robustness and evolutionary innovations.

Wagner A.

Bioessays. 2008 Apr;30(4):367-73. doi: 10.1002/bies.20728.

PMID:
18348184
15.

A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages.

Domazet-Loso T, Brajković J, Tautz D.

Trends Genet. 2007 Nov;23(11):533-9.

PMID:
18029048
16.

Ensembl 2008.

Flicek P, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Eyre T, Fitzgerald S, Fernandez-Banet J, Gräf S, Haider S, Hammond M, Holland R, Howe KL, Howe K, Johnson N, Jenkinson A, Kähäri A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Megy K, Meidl P, Overduin B, Parker A, Pritchard B, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Slater G, Smedley D, Spudich G, Trevanion S, Vilella AJ, Vogel J, White S, Wood M, Birney E, Cox T, Curwen V, Durbin R, Fernandez-Suarez XM, Herrero J, Hubbard TJ, Kasprzyk A, Proctor G, Smith J, Ureta-Vidal A, Searle S.

Nucleic Acids Res. 2008 Jan;36(Database issue):D707-14. Epub 2007 Nov 13.

17.

A second generation human haplotype map of over 3.1 million SNPs.

International HapMap Consortium, Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, Yang H, Zeng C, Gao Y, Hu H, Hu W, Li C, Lin W, Liu S, Pan H, Tang X, Wang J, Wang W, Yu J, Zhang B, Zhang Q, Zhao H, Zhao H, Zhou J, Gabriel SB, Barry R, Blumenstiel B, Camargo A, Defelice M, Faggart M, Goyette M, Gupta S, Moore J, Nguyen H, Onofrio RC, Parkin M, Roy J, Stahl E, Winchester E, Ziaugra L, Altshuler D, Shen Y, Yao Z, Huang W, Chu X, He Y, Jin L, Liu Y, Shen Y, Sun W, Wang H, Wang Y, Wang Y, Xiong X, Xu L, Waye MM, Tsui SK, Xue H, Wong JT, Galver LM, Fan JB, Gunderson K, Murray SS, Oliphant AR, Chee MS, Montpetit A, Chagnon F, Ferretti V, Leboeuf M, Olivier JF, Phillips MS, Roumy S, Sallée C, Verner A, Hudson TJ, Kwok PY, Cai D, Koboldt DC, Miller RD, Pawlikowska L, Taillon-Miller P, Xiao M, Tsui LC, Mak W, Song YQ, Tam PK, Nakamura Y, Kawaguchi T, Kitamoto T, Morizono T, Nagashima A, Ohnishi Y, Sekine A, Tanaka T, Tsunoda T, Deloukas P, Bird CP, Delgado M, Dermitzakis ET, Gwilliam R, Hunt S, Morrison J, Powell D, Stranger BE, Whittaker P, Bentley DR, Daly MJ, de Bakker PI, Barrett J, Chretien YR, Maller J, McCarroll S, Patterson N, Pe'er I, Price A, Purcell S, Richter DJ, Sabeti P, Saxena R, Schaffner SF, Sham PC, Varilly P, Altshuler D, Stein LD, Krishnan L, Smith AV, Tello-Ruiz MK, Thorisson GA, Chakravarti A, Chen PE, Cutler DJ, Kashuk CS, Lin S, Abecasis GR, Guan W, Li Y, Munro HM, Qin ZS, Thomas DJ, McVean G, Auton A, Bottolo L, Cardin N, Eyheramendy S, Freeman C, Marchini J, Myers S, Spencer C, Stephens M, Donnelly P, Cardon LR, Clarke G, Evans DM, Morris AP, Weir BS, Tsunoda T, Mullikin JC, Sherry ST, Feolo M, Skol A, Zhang H, Zeng C, Zhao H, Matsuda I, Fukushima Y, Macer DR, Suda E, Rotimi CN, Adebamowo CA, Ajayi I, Aniagwu T, Marshall PA, Nkwodimmah C, Royal CD, Leppert MF, Dixon M, Peiffer A, Qiu R, Kent A, Kato K, Niikawa N, Adewole IF, Knoppers BM, Foster MW, Clayton EW, Watkin J, Gibbs RA, Belmont JW, Muzny D, Nazareth L, Sodergren E, Weinstock GM, Wheeler DA, Yakub I, Gabriel SB, Onofrio RC, Richter DJ, Ziaugra L, Birren BW, Daly MJ, Altshuler D, Wilson RK, Fulton LL, Rogers J, Burton J, Carter NP, Clee CM, Griffiths M, Jones MC, McLay K, Plumb RW, Ross MT, Sims SK, Willey DL, Chen Z, Han H, Kang L, Godbout M, Wallenburg JC, L'Archevêque P, Bellemare G, Saeki K, Wang H, An D, Fu H, Li Q, Wang Z, Wang R, Holden AL, Brooks LD, McEwen JE, Guyer MS, Wang VO, Peterson JL, Shi M, Spiegel J, Sung LM, Zacharia LF, Collins FS, Kennedy K, Jamieson R, Stewart J.

Nature. 2007 Oct 18;449(7164):851-61.

18.
19.

Current topics in genome evolution: molecular mechanisms of new gene formation.

Babushok DV, Ostertag EM, Kazazian HH Jr.

Cell Mol Life Sci. 2007 Mar;64(5):542-54. Review.

PMID:
17192808
20.

Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes.

Borenstein E, Shlomi T, Ruppin E, Sharan R.

Nucleic Acids Res. 2007;35(1):e7. Epub 2006 Dec 7.

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