Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 28

1.

dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface.

Rot G, Parikh A, Curk T, Kuspa A, Shaulsky G, Zupan B.

BMC Bioinformatics. 2009 Aug 25;10:265. doi: 10.1186/1471-2105-10-265.

2.

Kin discrimination increases with genetic distance in a social amoeba.

Ostrowski EA, Katoh M, Shaulsky G, Queller DC, Strassmann JE.

PLoS Biol. 2008 Nov 25;6(11):e287. doi: 10.1371/journal.pbio.0060287.

3.

RNA-Seq: a revolutionary tool for transcriptomics.

Wang Z, Gerstein M, Snyder M.

Nat Rev Genet. 2009 Jan;10(1):57-63. doi: 10.1038/nrg2484. Review.

4.

Mapping and quantifying mammalian transcriptomes by RNA-Seq.

Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B.

Nat Methods. 2008 Jul;5(7):621-8. doi: 10.1038/nmeth.1226. Epub 2008 May 30.

PMID:
18516045
5.

The transcriptional landscape of the yeast genome defined by RNA sequencing.

Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M.

Science. 2008 Jun 6;320(5881):1344-9. doi: 10.1126/science.1158441. Epub 2008 May 1.

6.

Linear models and empirical bayes methods for assessing differential expression in microarray experiments.

Smyth GK.

Stat Appl Genet Mol Biol. 2004;3:Article3. Epub 2004 Feb 12.

PMID:
16646809
7.

Comparing the Dictyostelium and Entamoeba genomes reveals an ancient split in the Conosa lineage.

Song J, Xu Q, Olsen R, Loomis WF, Shaulsky G, Kuspa A, Sucgang R.

PLoS Comput Biol. 2005 Dec;1(7):e71. Epub 2005 Dec 16.

8.

Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis.

Jiao Y, Ma L, Strickland E, Deng XW.

Plant Cell. 2005 Dec;17(12):3239-56. Epub 2005 Nov 11.

9.

Microarray phenotyping in Dictyostelium reveals a regulon of chemotaxis genes.

Booth EO, Van Driessche N, Zhuchenko O, Kuspa A, Shaulsky G.

Bioinformatics. 2005 Dec 15;21(24):4371-7. Epub 2005 Oct 18.

PMID:
16234315
10.

Why highly expressed proteins evolve slowly.

Drummond DA, Bloom JD, Adami C, Wilke CO, Arnold FH.

Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14338-43. Epub 2005 Sep 21.

11.

Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.

Khaitovich P, Hellmann I, Enard W, Nowick K, Leinweber M, Franz H, Weiss G, Lachmann M, Pääbo S.

Science. 2005 Sep 16;309(5742):1850-4. Epub 2005 Sep 1.

12.

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks.

Maere S, Heymans K, Kuiper M.

Bioinformatics. 2005 Aug 15;21(16):3448-9. Epub 2005 Jun 21.

PMID:
15972284
13.

The genome of the social amoeba Dictyostelium discoideum.

Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A, Loulseged H, Mungall K, Oliver K, Price C, Quail MA, Urushihara H, Hernandez J, Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M, Spiegler S, Tivey A, Sugano S, White B, Walker D, Woodward J, Winckler T, Tanaka Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox EC, Chisholm RL, Gibbs R, Loomis WF, Platzer M, Kay RR, Williams J, Dear PH, Noegel AA, Barrell B, Kuspa A.

Nature. 2005 May 5;435(7038):43-57.

14.

Evolutionary significance of gene expression divergence.

Jordan IK, Mariño-Ramírez L, Koonin EV.

Gene. 2005 Jan 17;345(1):119-26. Epub 2004 Dec 29.

16.

Similarities and differences in genome-wide expression data of six organisms.

Bergmann S, Ihmels J, Barkai N.

PLoS Biol. 2004 Jan;2(1):E9. Epub 2003 Dec 15.

17.

Comparing genomic expression patterns across species identifies shared transcriptional profile in aging.

McCarroll SA, Murphy CT, Zou S, Pletcher SD, Chin CS, Jan YN, Kenyon C, Bargmann CI, Li H.

Nat Genet. 2004 Feb;36(2):197-204. Epub 2004 Jan 18.

PMID:
14730301
18.

A gene-coexpression network for global discovery of conserved genetic modules.

Stuart JM, Segal E, Koller D, Kim SK.

Science. 2003 Oct 10;302(5643):249-55. Epub 2003 Aug 21.

19.

Changing patterns of gene expression in dictyostelium prestalk cell subtypes recognized by in situ hybridization with genes from microarray analyses.

Maeda M, Sakamoto H, Iranfar N, Fuller D, Maruo T, Ogihara S, Morio T, Urushihara H, Tanaka Y, Loomis WF.

Eukaryot Cell. 2003 Jun;2(3):627-37.

20.

Evolution of gene expression in the Drosophila melanogaster subgroup.

Rifkin SA, Kim J, White KP.

Nat Genet. 2003 Feb;33(2):138-44. Epub 2003 Jan 27.

PMID:
12548287

Supplemental Content

Support Center