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Items: 1 to 20 of 47

1.

IMG ER: a system for microbial genome annotation expert review and curation.

Markowitz VM, Mavromatis K, Ivanova NN, Chen IM, Chu K, Kyrpides NC.

Bioinformatics. 2009 Sep 1;25(17):2271-8. doi: 10.1093/bioinformatics/btp393. Epub 2009 Jun 27.

PMID:
19561336
2.

EDGAR: a software framework for the comparative analysis of prokaryotic genomes.

Blom J, Albaum SP, Doppmeier D, Pühler A, Vorhölter FJ, Zakrzewski M, Goesmann A.

BMC Bioinformatics. 2009 May 20;10:154. doi: 10.1186/1471-2105-10-154.

3.

Genome-based approaches to develop vaccines against bacterial pathogens.

Serruto D, Serino L, Masignani V, Pizza M.

Vaccine. 2009 May 26;27(25-26):3245-50. doi: 10.1016/j.vaccine.2009.01.072. Epub 2009 Feb 5. Review.

PMID:
19200820
4.

The use of genomics in microbial vaccine development.

Bambini S, Rappuoli R.

Drug Discov Today. 2009 Mar;14(5-6):252-60. doi: 10.1016/j.drudis.2008.12.007. Epub 2009 Jan 15. Review.

PMID:
19150507
5.

Complete genome sequence of Haemophilus parasuis SH0165.

Yue M, Yang F, Yang J, Bei W, Cai X, Chen L, Dong J, Zhou R, Jin M, Jin Q, Chen H.

J Bacteriol. 2009 Feb;191(4):1359-60. doi: 10.1128/JB.01682-08. Epub 2008 Dec 12.

6.

Next-generation DNA sequencing.

Shendure J, Ji H.

Nat Biotechnol. 2008 Oct;26(10):1135-45. doi: 10.1038/nbt1486.

PMID:
18846087
7.

Next-generation sequencing: applications beyond genomes.

Marguerat S, Wilhelm BT, Bähler J.

Biochem Soc Trans. 2008 Oct;36(Pt 5):1091-6. doi: 10.1042/BST0361091.

8.

Next-generation DNA sequencing methods.

Mardis ER.

Annu Rev Genomics Hum Genet. 2008;9:387-402. doi: 10.1146/annurev.genom.9.081307.164359. Review.

PMID:
18576944
9.

A new class of cleavable fluorescent nucleotides: synthesis and optimization as reversible terminators for DNA sequencing by synthesis.

Turcatti G, Romieu A, Fedurco M, Tairi AP.

Nucleic Acids Res. 2008 Mar;36(4):e25. doi: 10.1093/nar/gkn021. Epub 2008 Feb 7.

10.

The RAST Server: rapid annotations using subsystems technology.

Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O.

BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.

11.

Next-generation sequencing transforms today's biology.

Schuster SC.

Nat Methods. 2008 Jan;5(1):16-8. doi: 10.1038/nmeth1156. Epub 2007 Dec 19. Review.

PMID:
18165802
12.

Gene expression profiling by massively parallel sequencing.

Torres TT, Metta M, Ottenwälder B, Schlötterer C.

Genome Res. 2008 Jan;18(1):172-7. Epub 2007 Nov 21.

13.

Annotation, comparison and databases for hundreds of bacterial genomes.

Médigue C, Moszer I.

Res Microbiol. 2007 Dec;158(10):724-36. Epub 2007 Oct 6. Review.

PMID:
18031997
14.

GenColors: annotation and comparative genomics of prokaryotes made easy.

Romualdi A, Felder M, Rose D, Gausmann U, Schilhabel M, Glöckner G, Platzer M, Sühnel J.

Methods Mol Biol. 2007;395:75-96.

PMID:
17993668
15.

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions.

Markowitz VM, Szeto E, Palaniappan K, Grechkin Y, Chu K, Chen IM, Dubchak I, Anderson I, Lykidis A, Mavromatis K, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2008 Jan;36(Database issue):D528-33. Epub 2007 Oct 12.

16.

Metagenomic analysis of the microbial community associated with the coral Porites astreoides.

Wegley L, Edwards R, Rodriguez-Brito B, Liu H, Rohwer F.

Environ Microbiol. 2007 Nov;9(11):2707-19.

PMID:
17922755
17.

The pan-genome: towards a knowledge-based discovery of novel targets for vaccines and antibacterials.

Muzzi A, Masignani V, Rappuoli R.

Drug Discov Today. 2007 Jun;12(11-12):429-39. Epub 2007 May 7. Review.

PMID:
17532526
18.

Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus.

Myers GS, Parker D, Al-Hasani K, Kennan RM, Seemann T, Ren Q, Badger JH, Selengut JD, Deboy RT, Tettelin H, Boyce JD, McCarl VP, Han X, Nelson WC, Madupu R, Mohamoud Y, Holley T, Fedorova N, Khouri H, Bottomley SP, Whittington RJ, Adler B, Songer JG, Rood JI, Paulsen IT.

Nat Biotechnol. 2007 May;25(5):569-75. Epub 2007 Apr 29.

PMID:
17468768
19.

Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.

Weber AP, Weber KL, Carr K, Wilkerson C, Ohlrogge JB.

Plant Physiol. 2007 May;144(1):32-42. Epub 2007 Mar 9.

20.

Identification of novel immunogens in Pasteurella multocida.

Al-Hasani K, Boyce J, McCarl VP, Bottomley S, Wilkie I, Adler B.

Microb Cell Fact. 2007 Jan 18;6:3.

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