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Items: 1 to 20 of 84

1.

Proteasome inhibitors in the treatment of multiple myeloma.

Shah JJ, Orlowski RZ.

Leukemia. 2009 Nov;23(11):1964-79. doi: 10.1038/leu.2009.173. Epub 2009 Sep 10. Review.

2.

Recognition and processing of ubiquitin-protein conjugates by the proteasome.

Finley D.

Annu Rev Biochem. 2009;78:477-513. doi: 10.1146/annurev.biochem.78.081507.101607. Review.

3.

RING domain E3 ubiquitin ligases.

Deshaies RJ, Joazeiro CA.

Annu Rev Biochem. 2009;78:399-434. doi: 10.1146/annurev.biochem.78.101807.093809. Review.

PMID:
19489725
4.

Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation.

Xu P, Duong DM, Seyfried NT, Cheng D, Xie Y, Robert J, Rush J, Hochstrasser M, Finley D, Peng J.

Cell. 2009 Apr 3;137(1):133-45. doi: 10.1016/j.cell.2009.01.041.

5.

Targeting the ubiquitin system in cancer therapy.

Hoeller D, Dikic I.

Nature. 2009 Mar 26;458(7237):438-44. doi: 10.1038/nature07960. Review.

PMID:
19325623
6.

Evaluation of clustering algorithms for protein complex and protein interaction network assembly.

Sardiu ME, Florens L, Washburn MP.

J Proteome Res. 2009 Jun;8(6):2944-52. doi: 10.1021/pr900073d.

PMID:
19317493
7.

Functional organization of the S. cerevisiae phosphorylation network.

Fiedler D, Braberg H, Mehta M, Chechik G, Cagney G, Mukherjee P, Silva AC, Shales M, Collins SR, van Wageningen S, Kemmeren P, Holstege FC, Weissman JS, Keogh MC, Koller D, Shokat KM, Krogan NJ.

Cell. 2009 Mar 6;136(5):952-63. doi: 10.1016/j.cell.2008.12.039.

8.

Uncovering biological network function via graphlet degree signatures.

Milenković T, Przulj N.

Cancer Inform. 2008;6:257-73. Epub 2008 Apr 14.

9.

A tale of two giant proteases.

Rockel B, Baumeister W.

Ernst Schering Found Symp Proc. 2008;(1):17-40.

PMID:
19198062
10.

Characterization of the human COP9 signalosome complex using affinity purification and mass spectrometry.

Fang L, Wang X, Yamoah K, Chen PL, Pan ZQ, Huang L.

J Proteome Res. 2008 Nov;7(11):4914-25. doi: 10.1021/pr800574c. Epub 2008 Oct 14.

11.

Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis.

Guerrero C, Milenkovic T, Przulj N, Kaiser P, Huang L.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13333-8. doi: 10.1073/pnas.0801870105. Epub 2008 Aug 29.

12.

High-quality binary protein interaction map of the yeast interactome network.

Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, Simon C, Tardivo L, Tam S, Svrzikapa N, Fan C, de Smet AS, Motyl A, Hudson ME, Park J, Xin X, Cusick ME, Moore T, Boone C, Snyder M, Roth FP, Barabási AL, Tavernier J, Hill DE, Vidal M.

Science. 2008 Oct 3;322(5898):104-10. doi: 10.1126/science.1158684. Epub 2008 Aug 21.

13.

Deregulated proteolysis by the F-box proteins SKP2 and beta-TrCP: tipping the scales of cancer.

Frescas D, Pagano M.

Nat Rev Cancer. 2008 Jun;8(6):438-49. doi: 10.1038/nrc2396. Review.

14.

Systematic approach for validating the ubiquitinated proteome.

Seyfried NT, Xu P, Duong DM, Cheng D, Hanfelt J, Peng J.

Anal Chem. 2008 Jun 1;80(11):4161-9. doi: 10.1021/ac702516a. Epub 2008 Apr 24.

15.

GraphCrunch: a tool for large network analyses.

Milenković T, Lai J, Przulj N.

BMC Bioinformatics. 2008 Jan 30;9:70. doi: 10.1186/1471-2105-9-70.

17.

Role of proteasomes in disease.

Dahlmann B.

BMC Biochem. 2007 Nov 22;8 Suppl 1:S3. Review.

18.

Nuclear fusion during yeast mating occurs by a three-step pathway.

Melloy P, Shen S, White E, McIntosh JR, Rose MD.

J Cell Biol. 2007 Nov 19;179(4):659-70.

19.

Identifying dynamic interactors of protein complexes by quantitative mass spectrometry.

Wang X, Huang L.

Mol Cell Proteomics. 2008 Jan;7(1):46-57. Epub 2007 Oct 12.

20.

Quantitative profiling of ubiquitylated proteins reveals proteasome substrates and the substrate repertoire influenced by the Rpn10 receptor pathway.

Mayor T, Graumann J, Bryan J, MacCoss MJ, Deshaies RJ.

Mol Cell Proteomics. 2007 Nov;6(11):1885-95. Epub 2007 Jul 20.

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