Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 39

1.

Systems-level dynamic analyses of fate change in murine embryonic stem cells.

Lu R, Markowetz F, Unwin RD, Leek JT, Airoldi EM, MacArthur BD, Lachmann A, Rozov R, Ma'ayan A, Boyer LA, Troyanskaya OG, Whetton AD, Lemischka IR.

Nature. 2009 Nov 19;462(7271):358-62. doi: 10.1038/nature08575.

2.

Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair.

Cordeddu V, Di Schiavi E, Pennacchio LA, Ma'ayan A, Sarkozy A, Fodale V, Cecchetti S, Cardinale A, Martin J, Schackwitz W, Lipzen A, Zampino G, Mazzanti L, Digilio MC, Martinelli S, Flex E, Lepri F, Bartholdi D, Kutsche K, Ferrero GB, Anichini C, Selicorni A, Rossi C, Tenconi R, Zenker M, Merlo D, Dallapiccola B, Iyengar R, Bazzicalupo P, Gelb BD, Tartaglia M.

Nat Genet. 2009 Sep;41(9):1022-6. doi: 10.1038/ng.425. Epub 2009 Aug 16.

3.

Phosphorylation dynamics during early differentiation of human embryonic stem cells.

Van Hoof D, Mu├▒oz J, Braam SR, Pinkse MW, Linding R, Heck AJ, Mummery CL, Krijgsveld J.

Cell Stem Cell. 2009 Aug 7;5(2):214-26. doi: 10.1016/j.stem.2009.05.021.

4.

Phosphoproteomic analysis of human embryonic stem cells.

Brill LM, Xiong W, Lee KB, Ficarro SB, Crain A, Xu Y, Terskikh A, Snyder EY, Ding S.

Cell Stem Cell. 2009 Aug 7;5(2):204-13. doi: 10.1016/j.stem.2009.06.002.

5.

KEA: kinase enrichment analysis.

Lachmann A, Ma'ayan A.

Bioinformatics. 2009 Mar 1;25(5):684-6. doi: 10.1093/bioinformatics/btp026. Epub 2009 Jan 28.

6.

Network integration and graph analysis in mammalian molecular systems biology.

Ma'ayan A.

IET Syst Biol. 2008 Sep;2(5):206-21. doi: 10.1049/iet-syb:20070075. Review.

7.

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.

Huang da W, Sherman BT, Lempicki RA.

Nucleic Acids Res. 2009 Jan;37(1):1-13. doi: 10.1093/nar/gkn923. Epub 2008 Nov 25.

8.

HMDB: a knowledgebase for the human metabolome.

Wishart DS, Knox C, Guo AC, Eisner R, Young N, Gautam B, Hau DD, Psychogios N, Dong E, Bouatra S, Mandal R, Sinelnikov I, Xia J, Jia L, Cruz JA, Lim E, Sobsey CA, Shrivastava S, Huang P, Liu P, Fang L, Peng J, Fradette R, Cheng D, Tzur D, Clements M, Lewis A, De Souza A, Zuniga A, Dawe M, Xiong Y, Clive D, Greiner R, Nazyrova A, Shaykhutdinov R, Li L, Vogel HJ, Forsythe I.

Nucleic Acids Res. 2009 Jan;37(Database issue):D603-10. doi: 10.1093/nar/gkn810. Epub 2008 Oct 25.

9.

Insights into the organization of biochemical regulatory networks using graph theory analyses.

Ma'ayan A.

J Biol Chem. 2009 Feb 27;284(9):5451-5. doi: 10.1074/jbc.R800056200. Epub 2008 Oct 20. Review.

10.

BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams.

Hulsen T, de Vlieg J, Alkema W.

BMC Genomics. 2008 Oct 16;9:488. doi: 10.1186/1471-2164-9-488.

11.

Gene-set approach for expression pattern analysis.

Nam D, Kim SY.

Brief Bioinform. 2008 May;9(3):189-97. doi: 10.1093/bib/bbn001. Epub 2008 Jan 17. Review. Erratum in: Brief Bioinform. 2008 Sep;9(5):450.

PMID:
18202032
12.

Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion.

Fury W, Batliwalla F, Gregersen PK, Li W.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:5531-4.

PMID:
17947148
13.

COXPRESdb: a database of coexpressed gene networks in mammals.

Obayashi T, Hayashi S, Shibaoka M, Saeki M, Ohta H, Kinoshita K.

Nucleic Acids Res. 2008 Jan;36(Database issue):D77-82. Epub 2007 Oct 11.

14.
15.

A protein interaction network for pluripotency of embryonic stem cells.

Wang J, Rao S, Chu J, Shen X, Levasseur DN, Theunissen TW, Orkin SH.

Nature. 2006 Nov 16;444(7117):364-8. Epub 2006 Nov 8.

PMID:
17093407
16.

BioGRID: a general repository for interaction datasets.

Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D535-9.

17.

Human protein reference database--2006 update.

Mishra GR, Suresh M, Kumaran K, Kannabiran N, Suresh S, Bala P, Shivakumar K, Anuradha N, Reddy R, Raghavan TM, Menon S, Hanumanthu G, Gupta M, Upendran S, Gupta S, Mahesh M, Jacob B, Mathew P, Chatterjee P, Arun KS, Sharma S, Chandrika KN, Deshpande N, Palvankar K, Raghavnath R, Krishnakanth R, Karathia H, Rekha B, Nayak R, Vishnupriya G, Kumar HG, Nagini M, Kumar GS, Jose R, Deepthi P, Mohan SS, Gandhi TK, Harsha HC, Deshpande KS, Sarker M, Prasad TS, Pandey A.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D411-4.

18.

miRBase: microRNA sequences, targets and gene nomenclature.

Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4.

19.

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP.

Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50. Epub 2005 Sep 30.

20.

Towards a proteome-scale map of the human protein-protein interaction network.

Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M.

Nature. 2005 Oct 20;437(7062):1173-8. Epub 2005 Sep 28.

PMID:
16189514

Supplemental Content

Support Center