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Items: 10

1.

Cross-product extensions of the Gene Ontology.

Mungall CJ, Bada M, Berardini TZ, Deegan J, Ireland A, Harris MA, Hill DP, Lomax J.

J Biomed Inform. 2011 Feb;44(1):80-6. doi: 10.1016/j.jbi.2010.02.002. Epub 2010 Feb 10.

2.

Integrating phenotype ontologies across multiple species.

Mungall CJ, Gkoutos GV, Smith CL, Haendel MA, Lewis SE, Ashburner M.

Genome Biol. 2010 Jan 8;11(1):R2. doi: 10.1186/gb-2010-11-1-r2.

3.

An improved ontological representation of dendritic cells as a paradigm for all cell types.

Masci AM, Arighi CN, Diehl AD, Lieberman AE, Mungall C, Scheuermann RH, Smith B, Cowell LG.

BMC Bioinformatics. 2009 Feb 25;10:70. doi: 10.1186/1471-2105-10-70.

4.

Framework for a protein ontology.

Natale DA, Arighi CN, Barker WC, Blake J, Chang TC, Hu Z, Liu H, Smith B, Wu CH.

BMC Bioinformatics. 2007 Nov 27;8 Suppl 9:S1.

5.

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ; OBI Consortium, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S.

Nat Biotechnol. 2007 Nov;25(11):1251-5.

6.

OBO-Edit--an ontology editor for biologists.

Day-Richter J, Harris MA, Haendel M; Gene Ontology OBO-Edit Working Group, Lewis S.

Bioinformatics. 2007 Aug 15;23(16):2198-200. Epub 2007 Jun 1.

PMID:
17545183
7.

Ontology development for biological systems: immunology.

Diehl AD, Lee JA, Scheuermann RH, Blake JA.

Bioinformatics. 2007 Apr 1;23(7):913-5. Epub 2007 Jan 31.

PMID:
17267433
8.

Relations in biomedical ontologies.

Smith B, Ceusters W, Klagges B, Köhler J, Kumar A, Lomax J, Mungall C, Neuhaus F, Rector AL, Rosse C.

Genome Biol. 2005;6(5):R46. Epub 2005 Apr 28.

9.

An ontology for cell types.

Bard J, Rhee SY, Ashburner M.

Genome Biol. 2005;6(2):R21. Epub 2005 Jan 14.

10.

Extension and integration of the gene ontology (GO): combining GO vocabularies with external vocabularies.

Hill DP, Blake JA, Richardson JE, Ringwald M.

Genome Res. 2002 Dec;12(12):1982-91.

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