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Items: 1 to 20 of 39

1.

PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction.

Krallinger M, Rodriguez-Penagos C, Tendulkar A, Valencia A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W160-5. doi: 10.1093/nar/gkp484. Epub 2009 Jun 11.

2.

MedlineRanker: flexible ranking of biomedical literature.

Fontaine JF, Barbosa-Silva A, Schaefer M, Huska MR, Muro EM, Andrade-Navarro MA.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W141-6. doi: 10.1093/nar/gkp353. Epub 2009 May 8.

3.

Querying parse tree database of Medline text to synthesize user-specific biomolecular networks.

Tari L, Hakenberg J, Gonzalez G, Baral C.

Pac Symp Biocomput. 2009:87-98.

4.

Arena3D: visualization of biological networks in 3D.

Pavlopoulos GA, O'Donoghue SI, Satagopam VP, Soldatos TG, Pafilis E, Schneider R.

BMC Syst Biol. 2008 Nov 28;2:104. doi: 10.1186/1752-0509-2-104.

5.

STRING 8--a global view on proteins and their functional interactions in 630 organisms.

Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, Bork P, von Mering C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D412-6. doi: 10.1093/nar/gkn760. Epub 2008 Oct 21.

6.

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

Genome Biol. 2008;9 Suppl 2:S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1.

7.

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. doi: 10.1186/gb-2008-9-s2-s4. Epub 2008 Sep 1.

8.

Salicylic acid in plant defence--the players and protagonists.

Loake G, Grant M.

Curr Opin Plant Biol. 2007 Oct;10(5):466-72. Epub 2007 Sep 27. Review.

PMID:
17904410
9.

Mechanisms of high salinity tolerance in plants.

Tuteja N.

Methods Enzymol. 2007;428:419-38. Review.

PMID:
17875432
10.

Automatic reconstruction of a bacterial regulatory network using Natural Language Processing.

Rodríguez-Penagos C, Salgado H, Martínez-Flores I, Collado-Vides J.

BMC Bioinformatics. 2007 Aug 7;8:293.

11.
12.

Regulatory metabolic networks in drought stress responses.

Seki M, Umezawa T, Urano K, Shinozaki K.

Curr Opin Plant Biol. 2007 Jun;10(3):296-302. Epub 2007 Apr 30. Review.

PMID:
17468040
13.

Salicylic acid-, jasmonic acid- and ethylene-mediated regulation of plant defense signaling.

Kachroo A, Kachroo P.

Genet Eng (N Y). 2007;28:55-83. Review. No abstract available.

PMID:
17153933
14.

Text mining and its potential applications in systems biology.

Ananiadou S, Kell DB, Tsujii J.

Trends Biotechnol. 2006 Dec;24(12):571-9. Epub 2006 Oct 12. Review.

PMID:
17045684
15.

Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line.

Natarajan J, Berrar D, Dubitzky W, Hack C, Zhang Y, DeSesa C, Van Brocklyn JR, Bremer EG.

BMC Bioinformatics. 2006 Aug 10;7:373.

16.

AliBaba: PubMed as a graph.

Plake C, Schiemann T, Pankalla M, Hakenberg J, Leser U.

Bioinformatics. 2006 Oct 1;22(19):2444-5. Epub 2006 Jul 26.

PMID:
16870931
17.

Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks.

Fujita M, Fujita Y, Noutoshi Y, Takahashi F, Narusaka Y, Yamaguchi-Shinozaki K, Shinozaki K.

Curr Opin Plant Biol. 2006 Aug;9(4):436-42. Epub 2006 Jun 8. Review.

PMID:
16759898
18.

The role of ethylene in host-pathogen interactions.

Broekaert WF, Delauré SL, De Bolle MF, Cammue BP.

Annu Rev Phytopathol. 2006;44:393-416. Review.

PMID:
16602950
19.

HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms.

Persico M, Ceol A, Gavrila C, Hoffmann R, Florio A, Cesareni G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S21.

20.

Response and adaptation by plants to flooding stress.

Jackson MB, Colmer TD.

Ann Bot. 2005 Sep;96(4):501-5.

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