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Items: 1 to 20 of 158

1.

Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote.

Richardson JM, Colloms SD, Finnegan DJ, Walkinshaw MD.

Cell. 2009 Sep 18;138(6):1096-108. doi: 10.1016/j.cell.2009.07.012.

2.

CASP8 results in context of previous experiments.

Kryshtafovych A, Fidelis K, Moult J.

Proteins. 2009;77 Suppl 9:217-28. doi: 10.1002/prot.22562.

3.

Site-specific insertion of IS492 in Pseudoalteromonas atlantica.

Higgins BP, Popkowski AC, Caruana PR, Karls AC.

J Bacteriol. 2009 Oct;191(20):6408-14. doi: 10.1128/JB.00771-09. Epub 2009 Aug 14.

4.

Initial stages of V(D)J recombination: the organization of RAG1/2 and RSS DNA in the postcleavage complex.

Grundy GJ, Ramón-Maiques S, Dimitriadis EK, Kotova S, Biertümpfel C, Heymann JB, Steven AC, Gellert M, Yang W.

Mol Cell. 2009 Jul 31;35(2):217-27. doi: 10.1016/j.molcel.2009.06.022.

5.

A transposon-based chromosomal engineering method to survey a large cis-regulatory landscape in mice.

Kokubu C, Horie K, Abe K, Ikeda R, Mizuno S, Uno Y, Ogiwara S, Ohtsuka M, Isotani A, Okabe M, Imai K, Takeda J.

Nat Genet. 2009 Aug;41(8):946-52. doi: 10.1038/ng.397. Epub 2009 Jul 26.

PMID:
19633672
6.

Structural basis for functional tetramerization of lentiviral integrase.

Hare S, Di Nunzio F, Labeja A, Wang J, Engelman A, Cherepanov P.

PLoS Pathog. 2009 Jul;5(7):e1000515. doi: 10.1371/journal.ppat.1000515. Epub 2009 Jul 17.

7.

Base flipping in tn10 transposition: an active flip and capture mechanism.

Bischerour J, Chalmers R.

PLoS One. 2009 Jul 10;4(7):e6201. doi: 10.1371/journal.pone.0006201.

8.

A guide to template based structure prediction.

Qu X, Swanson R, Day R, Tsai J.

Curr Protein Pept Sci. 2009 Jun;10(3):270-85. Review.

PMID:
19519455
9.

Piecing together the structure of retroviral integrase, an important target in AIDS therapy.

Jaskolski M, Alexandratos JN, Bujacz G, Wlodawer A.

FEBS J. 2009 Jun;276(11):2926-46. doi: 10.1111/j.1742-4658.2009.07009.x. Epub 2009 Apr 14. Review.

10.

Transposon-mediated genome manipulation in vertebrates.

Ivics Z, Li MA, Mátés L, Boeke JD, Nagy A, Bradley A, Izsvák Z.

Nat Methods. 2009 Jun;6(6):415-22. doi: 10.1038/nmeth.1332. Review.

11.

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination.

Lobley A, Sadowski MI, Jones DT.

Bioinformatics. 2009 Jul 15;25(14):1761-7. doi: 10.1093/bioinformatics/btp302. Epub 2009 May 7.

PMID:
19429599
12.

Homology modeling in drug discovery: current trends and applications.

Cavasotto CN, Phatak SS.

Drug Discov Today. 2009 Jul;14(13-14):676-83. doi: 10.1016/j.drudis.2009.04.006. Epub 2009 May 5. Review.

PMID:
19422931
13.

Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis.

Yin FF, Bailey S, Innis CA, Ciubotaru M, Kamtekar S, Steitz TA, Schatz DG.

Nat Struct Mol Biol. 2009 May;16(5):499-508. doi: 10.1038/nsmb.1593. Epub 2009 Apr 26.

14.

The new IS1595 family, its relation to IS1 and the frontier between insertion sequences and transposons.

Siguier P, Gagnevin L, Chandler M.

Res Microbiol. 2009 Apr;160(3):232-41. doi: 10.1016/j.resmic.2009.02.003. Epub 2009 Mar 13.

PMID:
19286454
15.

piggyBac transposition reprograms fibroblasts to induced pluripotent stem cells.

Woltjen K, Michael IP, Mohseni P, Desai R, Mileikovsky M, Hämäläinen R, Cowling R, Wang W, Liu P, Gertsenstein M, Kaji K, Sung HK, Nagy A.

Nature. 2009 Apr 9;458(7239):766-70. doi: 10.1038/nature07863. Epub 2009 Mar 1.

16.

Structural basis for HIV-1 DNA integration in the human genome, role of the LEDGF/P75 cofactor.

Michel F, Crucifix C, Granger F, Eiler S, Mouscadet JF, Korolev S, Agapkina J, Ziganshin R, Gottikh M, Nazabal A, Emiliani S, Benarous R, Moras D, Schultz P, Ruff M.

EMBO J. 2009 Apr 8;28(7):980-91. doi: 10.1038/emboj.2009.41. Epub 2009 Feb 19.

17.

New superfamilies of eukaryotic DNA transposons and their internal divisions.

Bao W, Jurka MG, Kapitonov VV, Jurka J.

Mol Biol Evol. 2009 May;26(5):983-93. doi: 10.1093/molbev/msp013. Epub 2009 Jan 27.

18.

Retroviral integrase superfamily: the structural perspective.

Nowotny M.

EMBO Rep. 2009 Feb;10(2):144-51. doi: 10.1038/embor.2008.256. Epub 2009 Jan 23. Review.

19.

Analysis of the DDE motif in the Mutator superfamily.

Hua-Van A, Capy P.

J Mol Evol. 2008 Dec;67(6):670-81. doi: 10.1007/s00239-008-9178-1.

PMID:
19018586
20.

CDD: specific functional annotation with the Conserved Domain Database.

Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH.

Nucleic Acids Res. 2009 Jan;37(Database issue):D205-10. doi: 10.1093/nar/gkn845. Epub 2008 Nov 4.

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