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Items: 1 to 20 of 69

1.

Unlocking the secrets of the genome.

Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, Waterston RH; modENCODE Consortium.

Nature. 2009 Jun 18;459(7249):927-30. doi: 10.1038/459927a. No abstract available.

3.

Transcription initiation activity sets replication origin efficiency in mammalian cells.

Sequeira-Mendes J, Díaz-Uriarte R, Apedaile A, Huntley D, Brockdorff N, Gómez M.

PLoS Genet. 2009 Apr;5(4):e1000446. doi: 10.1371/journal.pgen.1000446. Epub 2009 Apr 10.

4.

Genome-wide views of chromatin structure.

Rando OJ, Chang HY.

Annu Rev Biochem. 2009;78:245-71. doi: 10.1146/annurev.biochem.78.071107.134639. Review.

5.

Human mutation rate associated with DNA replication timing.

Stamatoyannopoulos JA, Adzhubei I, Thurman RE, Kryukov GV, Mirkin SM, Sunyaev SR.

Nat Genet. 2009 Apr;41(4):393-5. doi: 10.1038/ng.363. Epub 2009 Mar 15.

6.

Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome.

Schwaiger M, Stadler MB, Bell O, Kohler H, Oakeley EJ, Schübeler D.

Genes Dev. 2009 Mar 1;23(5):589-601. doi: 10.1101/gad.511809.

7.

Active promoters and insulators are marked by the centrosomal protein 190.

Bartkuhn M, Straub T, Herold M, Herrmann M, Rathke C, Saumweber H, Gilfillan GD, Becker PB, Renkawitz R.

EMBO J. 2009 Apr 8;28(7):877-88. doi: 10.1038/emboj.2009.34. Epub 2009 Feb 19.

8.

The DNA-encoded nucleosome organization of a eukaryotic genome.

Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, LeProust EM, Hughes TR, Lieb JD, Widom J, Segal E.

Nature. 2009 Mar 19;458(7236):362-6. doi: 10.1038/nature07667. Epub 2008 Dec 17.

9.

Genome-wide profiling of salt fractions maps physical properties of chromatin.

Henikoff S, Henikoff JG, Sakai A, Loeb GB, Ahmad K.

Genome Res. 2009 Mar;19(3):460-9. doi: 10.1101/gr.087619.108. Epub 2008 Dec 16.

10.

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Core LJ, Waterfall JJ, Lis JT.

Science. 2008 Dec 19;322(5909):1845-8. doi: 10.1126/science.1162228. Epub 2008 Dec 4.

11.

Divergent transcription from active promoters.

Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA, Young RA, Sharp PA.

Science. 2008 Dec 19;322(5909):1849-51. doi: 10.1126/science.1162253. Epub 2008 Dec 4.

12.

Global reorganization of replication domains during embryonic stem cell differentiation.

Hiratani I, Ryba T, Itoh M, Yokochi T, Schwaiger M, Chang CW, Lyou Y, Townes TM, Schübeler D, Gilbert DM.

PLoS Biol. 2008 Oct 7;6(10):e245. doi: 10.1371/journal.pbio.0060245.

13.

Genome-wide studies highlight indirect links between human replication origins and gene regulation.

Cadoret JC, Meisch F, Hassan-Zadeh V, Luyten I, Guillet C, Duret L, Quesneville H, Prioleau MN.

Proc Natl Acad Sci U S A. 2008 Oct 14;105(41):15837-42. doi: 10.1073/pnas.0805208105. Epub 2008 Oct 6.

14.

Cdc7-Drf1 kinase links chromosome cohesion to the initiation of DNA replication in Xenopus egg extracts.

Takahashi TS, Basu A, Bermudez V, Hurwitz J, Walter JC.

Genes Dev. 2008 Jul 15;22(14):1894-905. doi: 10.1101/gad.1683308.

15.

DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin.

Goren A, Tabib A, Hecht M, Cedar H.

Genes Dev. 2008 May 15;22(10):1319-24. doi: 10.1101/gad.468308. Epub 2008 Apr 28.

16.

Cohesins functionally associate with CTCF on mammalian chromosome arms.

Parelho V, Hadjur S, Spivakov M, Leleu M, Sauer S, Gregson HC, Jarmuz A, Canzonetta C, Webster Z, Nesterova T, Cobb BS, Yokomori K, Dillon N, Aragon L, Fisher AG, Merkenschlager M.

Cell. 2008 Feb 8;132(3):422-33. doi: 10.1016/j.cell.2008.01.011. Epub 2008 Jan 31.

17.

Cohesin mediates transcriptional insulation by CCCTC-binding factor.

Wendt KS, Yoshida K, Itoh T, Bando M, Koch B, Schirghuber E, Tsutsumi S, Nagae G, Ishihara K, Mishiro T, Yahata K, Imamoto F, Aburatani H, Nakao M, Imamoto N, Maeshima K, Shirahige K, Peters JM.

Nature. 2008 Feb 14;451(7180):796-801. doi: 10.1038/nature06634. Epub 2008 Jan 30.

PMID:
18235444
18.

A nucleosome-guided map of transcription factor binding sites in yeast.

Narlikar L, Gordân R, Hartemink AJ.

PLoS Comput Biol. 2007 Nov;3(11):e215. Epub 2007 Sep 24.

19.

Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome.

Misulovin Z, Schwartz YB, Li XY, Kahn TG, Gause M, MacArthur S, Fay JC, Eisen MB, Pirrotta V, Biggin MD, Dorsett D.

Chromosoma. 2008 Feb;117(1):89-102. Epub 2007 Oct 27.

20.

Model-based analysis of two-color arrays (MA2C).

Song JS, Johnson WE, Zhu X, Zhang X, Li W, Manrai AK, Liu JS, Chen R, Liu XS.

Genome Biol. 2007;8(8):R178.

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