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Items: 1 to 20 of 25

1.

The ABC of reverse engineering biological signalling systems.

Secrier M, Toni T, Stumpf MP.

Mol Biosyst. 2009 Dec;5(12):1925-35. doi: 10.1039/b908951a. Epub 2009 Sep 24.

PMID:
19798456
2.

Model criticism based on likelihood-free inference, with an application to protein network evolution.

Ratmann O, Andrieu C, Wiuf C, Richardson S.

Proc Natl Acad Sci U S A. 2009 Jun 30;106(26):10576-81. doi: 10.1073/pnas.0807882106. Epub 2009 Jun 12.

PMID:
19525398
3.

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems.

Toni T, Welch D, Strelkowa N, Ipsen A, Stumpf MP.

J R Soc Interface. 2009 Feb 6;6(31):187-202.

PMID:
19205079
4.

Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data.

Chen WW, Schoeberl B, Jasper PJ, Niepel M, Nielsen UB, Lauffenburger DA, Sorger PK.

Mol Syst Biol. 2009;5:239. doi: 10.1038/msb.2008.74. Epub 2009 Jan 20.

PMID:
19156131
5.

Parameter inference for biochemical systems that undergo a Hopf bifurcation.

Kirk PD, Toni T, Stumpf MP.

Biophys J. 2008 Jul;95(2):540-9. doi: 10.1529/biophysj.107.126086. Epub 2008 May 2.

PMID:
18456830
6.

Bayesian ranking of biochemical system models.

Vyshemirsky V, Girolami MA.

Bioinformatics. 2008 Mar 15;24(6):833-9. Epub 2007 Dec 5. Erratum in: Bioinformatics. 2008 Oct 15;24(20):2421.

PMID:
18057018
7.

Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum.

Ratmann O, Jørgensen O, Hinkley T, Stumpf M, Richardson S, Wiuf C.

PLoS Comput Biol. 2007 Nov;3(11):e230. Epub 2007 Oct 9.

PMID:
18052538
8.

Universally sloppy parameter sensitivities in systems biology models.

Gutenkunst RN, Waterfall JJ, Casey FP, Brown KS, Myers CR, Sethna JP.

PLoS Comput Biol. 2007 Oct;3(10):1871-78. Epub 2007 Aug 15.

PMID:
17922568
9.

A Markov random field model for network-based analysis of genomic data.

Wei Z, Li H.

Bioinformatics. 2007 Jun 15;23(12):1537-44. Epub 2007 May 5.

PMID:
17483504
10.

Sequential Monte Carlo without likelihoods.

Sisson SA, Fan Y, Tanaka MM.

Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1760-5. Epub 2007 Jan 30. Erratum in: Proc Natl Acad Sci U S A. 2009 Sep 29;106(39):16889.

PMID:
17264216
11.

SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.

Zi Z, Klipp E.

Bioinformatics. 2006 Nov 1;22(21):2704-5. Epub 2006 Aug 22.

PMID:
16926221
12.

JAK/STAT signalling in Drosophila: insights into conserved regulatory and cellular functions.

Arbouzova NI, Zeidler MP.

Development. 2006 Jul;133(14):2605-16. Review.

PMID:
16794031
13.

Uses and abuses of mathematics in biology.

May RM.

Science. 2004 Feb 6;303(5659):790-3.

PMID:
14764866
14.

Markov chain Monte Carlo without likelihoods.

Marjoram P, Molitor J, Plagnol V, Tavare S.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15324-8. Epub 2003 Dec 8.

PMID:
14663152
15.

Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling.

Swameye I, Muller TG, Timmer J, Sandra O, Klingmuller U.

Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):1028-33. Epub 2003 Jan 27.

PMID:
12552139
16.

Approximate Bayesian computation in population genetics.

Beaumont MA, Zhang W, Balding DJ.

Genetics. 2002 Dec;162(4):2025-35.

PMID:
12524368
17.

STAT proteins and transcriptional responses to extracellular signals.

Horvath CM.

Trends Biochem Sci. 2000 Oct;25(10):496-502. Review.

PMID:
11050435
18.

Dynamic redistribution of STAT1 protein in IFN signaling visualized by GFP fusion proteins.

Köster M, Hauser H.

Eur J Biochem. 1999 Feb;260(1):137-44.

PMID:
10091593
19.

STATs and gene regulation.

Darnell JE Jr.

Science. 1997 Sep 12;277(5332):1630-5. Review.

PMID:
9287210
20.

Prionics or the kinetic basis of prion diseases.

Eigen M.

Biophys Chem. 1996 Dec 10;63(1):A1-18. Review.

PMID:
8981746

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