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Items: 1 to 20 of 53


ELM: the status of the 2010 eukaryotic linear motif resource.

Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, Gibson TJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D167-80. doi: 10.1093/nar/gkp1016. Epub 2009 Nov 17.


Cell regulation: determined to signal discrete cooperation.

Gibson TJ.

Trends Biochem Sci. 2009 Oct;34(10):471-82. doi: 10.1016/j.tibs.2009.06.007. Epub 2009 Sep 8.


A generic method for assignment of reliability scores applied to solvent accessibility predictions.

Petersen B, Petersen TN, Andersen P, Nielsen M, Lundegaard C.

BMC Struct Biol. 2009 Jul 31;9:51. doi: 10.1186/1472-6807-9-51.


Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery.

Davey NE, Shields DC, Edwards RJ.

Bioinformatics. 2009 Feb 15;25(4):443-50. doi: 10.1093/bioinformatics/btn664. Epub 2009 Jan 9.


Minimotif miner 2nd release: a database and web system for motif search.

Rajasekaran S, Balla S, Gradie P, Gryk MR, Kadaveru K, Kundeti V, Maciejewski MW, Mi T, Rubino N, Vyas J, Schiller MR.

Nucleic Acids Res. 2009 Jan;37(Database issue):D185-90. doi: 10.1093/nar/gkn865. Epub 2008 Oct 31.


Allostery: an illustrated definition for the 'second secret of life'.

Fenton AW.

Trends Biochem Sci. 2008 Sep;33(9):420-5. doi: 10.1016/j.tibs.2008.05.009. Epub 2008 Aug 15. Review.


Peptide-mediated interactions in biological systems: new discoveries and applications.

Petsalaki E, Russell RB.

Curr Opin Biotechnol. 2008 Aug;19(4):344-50. doi: 10.1016/j.copbio.2008.06.004. Epub 2008 Jul 12.


Contextual specificity in peptide-mediated protein interactions.

Stein A, Aloy P.

PLoS One. 2008 Jul 2;3(7):e2524. doi: 10.1371/journal.pone.0002524.


Understanding eukaryotic linear motifs and their role in cell signaling and regulation.

Diella F, Haslam N, Chica C, Budd A, Michael S, Brown NP, Trave G, Gibson TJ.

Front Biosci. 2008 May 1;13:6580-603. Review.


BRCT domains: phosphopeptide binding and signaling modules.

Rodriguez MC, Songyang Z.

Front Biosci. 2008 May 1;13:5905-15. Review.


A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences.

Chica C, Labarga A, Gould CM, López R, Gibson TJ.

BMC Bioinformatics. 2008 May 6;9:229. doi: 10.1186/1471-2105-9-229.


PepCyber:P~PEP: a database of human protein protein interactions mediated by phosphoprotein-binding domains.

Gong W, Zhou D, Ren Y, Wang Y, Zuo Z, Shen Y, Xiao F, Zhu Q, Hong A, Zhou X, Gao X, Li T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D679-83. Epub 2007 Dec 26.


A computational strategy for the prediction of functional linear peptide motifs in proteins.

Dinkel H, Sticht H.

Bioinformatics. 2007 Dec 15;23(24):3297-303. Epub 2007 Oct 31.


Phospho.ELM: a database of phosphorylation sites--update 2008.

Diella F, Gould CM, Chica C, Via A, Gibson TJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D240-4. Epub 2007 Oct 25.


SH3-Hunter: discovery of SH3 domain interaction sites in proteins.

Ferraro E, Peluso D, Via A, Ausiello G, Helmer-Citterich M.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W451-4. Epub 2007 May 7.


Local structural disorder imparts plasticity on linear motifs.

Fuxreiter M, Tompa P, Simon I.

Bioinformatics. 2007 Apr 15;23(8):950-6. Epub 2007 Mar 25.


Phospho3D: a database of three-dimensional structures of protein phosphorylation sites.

Zanzoni A, Ausiello G, Via A, Gherardini PF, Helmer-Citterich M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D229-31. Epub 2006 Nov 16.


DOMINO: a database of domain-peptide interactions.

Ceol A, Chatr-aryamontri A, Santonico E, Sacco R, Castagnoli L, Cesareni G.

Nucleic Acids Res. 2007 Jan;35(Database issue):D557-60. Epub 2006 Nov 29.

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