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Items: 18

1.

The phylogenetic forest and the quest for the elusive tree of life.

Koonin EV, Wolf YI, Puigbò P.

Cold Spring Harb Symp Quant Biol. 2009;74:205-13. doi: 10.1101/sqb.2009.74.006. Epub 2009 Aug 17. Review.

2.

What did Darwin say about microbes, and how did microbiology respond?

O'Malley MA.

Trends Microbiol. 2009 Aug;17(8):341-7. doi: 10.1016/j.tim.2009.05.009. Epub 2009 Aug 11.

PMID:
19679480
3.

Eradicating typological thinking in prokaryotic systematics and evolution.

Doolittle WF.

Cold Spring Harb Symp Quant Biol. 2009;74:197-204. doi: 10.1101/sqb.2009.74.002. Epub 2009 Aug 10. Review.

PMID:
19667014
4.

The practice of classification and the theory of evolution, and what the demise of Charles Darwin's tree of life hypothesis means for both of them.

Doolittle WF.

Philos Trans R Soc Lond B Biol Sci. 2009 Aug 12;364(1527):2221-8. doi: 10.1098/rstb.2009.0032.

5.

Getting a better picture of microbial evolution en route to a network of genomes.

Dagan T, Martin W.

Philos Trans R Soc Lond B Biol Sci. 2009 Aug 12;364(1527):2187-96. doi: 10.1098/rstb.2009.0040. Review.

6.

On the origin of prokaryotic species.

Doolittle WF, Zhaxybayeva O.

Genome Res. 2009 May;19(5):744-56. doi: 10.1101/gr.086645.108. Review.

7.

The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages.

Wolf YI, Novichkov PS, Karev GP, Koonin EV, Lipman DJ.

Proc Natl Acad Sci U S A. 2009 May 5;106(18):7273-80. doi: 10.1073/pnas.0901808106. Epub 2009 Apr 7.

8.

How the microbial world saved evolution from the scylla of molecular biology and the charybdis of the modern synthesis.

Woese CR, Goldenfeld N.

Microbiol Mol Biol Rev. 2009 Mar;73(1):14-21. doi: 10.1128/MMBR.00002-09.

9.

Darwinian evolution in the light of genomics.

Koonin EV.

Nucleic Acids Res. 2009 Mar;37(4):1011-34. doi: 10.1093/nar/gkp089. Epub 2009 Feb 12.

10.

Estimating the size of the bacterial pan-genome.

Lapierre P, Gogarten JP.

Trends Genet. 2009 Mar;25(3):107-10. doi: 10.1016/j.tig.2008.12.004. Epub 2009 Jan 23.

PMID:
19168257
11.

Birthdays to remember.

Browne J.

Nature. 2008 Nov 20;456(7220):324-5. doi: 10.1038/456324a. No abstract available.

PMID:
19020602
12.

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.

Koonin EV, Wolf YI.

Nucleic Acids Res. 2008 Dec;36(21):6688-719. doi: 10.1093/nar/gkn668. Epub 2008 Oct 23. Review.

13.

Evolution of genome architecture.

Koonin EV.

Int J Biochem Cell Biol. 2009 Feb;41(2):298-306. doi: 10.1016/j.biocel.2008.09.015. Epub 2008 Sep 26. Review.

14.

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

Drummond DA, Wilke CO.

Cell. 2008 Jul 25;134(2):341-52. doi: 10.1016/j.cell.2008.05.042.

15.

The last universal common ancestor: emergence, constitution and genetic legacy of an elusive forerunner.

Glansdorff N, Xu Y, Labedan B.

Biol Direct. 2008 Jul 9;3:29. doi: 10.1186/1745-6150-3-29. Review.

16.

Mutation as a stress response and the regulation of evolvability.

Galhardo RS, Hastings PJ, Rosenberg SM.

Crit Rev Biochem Mol Biol. 2007 Sep-Oct;42(5):399-435. Review.

17.

Time for a change.

Pace NR.

Nature. 2006 May 18;441(7091):289. No abstract available.

PMID:
16710401
18.

Bacterial evolution.

Woese CR.

Microbiol Rev. 1987 Jun;51(2):221-71. Review. No abstract available.

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