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Items: 1 to 20 of 54

1.

Word-based characterization of promoters involved in human DNA repair pathways.

Lichtenberg J, Jacox E, Welch JD, Kurz K, Liang X, Yang MQ, Drews F, Ecker K, Lee SS, Elnitski L, Welch LR.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S18. doi: 10.1186/1471-2164-10-S1-S18.

2.

The sequences of Arabidopsis GA-INSENSITIVE RNA constitute the motifs that are necessary and sufficient for RNA long-distance trafficking.

Huang NC, Yu TS.

Plant J. 2009 Sep;59(6):921-9. doi: 10.1111/j.1365-313X.2009.03918.x. Epub 2009 May 12.

3.

Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks.

Vandepoele K, Quimbaya M, Casneuf T, De Veylder L, Van de Peer Y.

Plant Physiol. 2009 Jun;150(2):535-46. doi: 10.1104/pp.109.136028. Epub 2009 Apr 8.

4.

A polypyrimidine tract binding protein, pumpkin RBP50, forms the basis of a phloem-mobile ribonucleoprotein complex.

Ham BK, Brandom JL, Xoconostle-Cázares B, Ringgold V, Lough TJ, Lucas WJ.

Plant Cell. 2009 Jan;21(1):197-215. doi: 10.1105/tpc.108.061317. Epub 2009 Jan 2.

5.

Identifying functional modules in protein-protein interaction networks: an integrated exact approach.

Dittrich MT, Klau GW, Rosenwald A, Dandekar T, Müller T.

Bioinformatics. 2008 Jul 1;24(13):i223-31. doi: 10.1093/bioinformatics/btn161.

6.

Efficient computation of absent words in genomic sequences.

Herold J, Kurtz S, Giegerich R.

BMC Bioinformatics. 2008 Mar 26;9:167. doi: 10.1186/1471-2105-9-167.

7.

Absent sequences: nullomers and primes.

Hampikian G, Andersen T.

Pac Symp Biocomput. 2007:355-66.

8.

A high-resolution root spatiotemporal map reveals dominant expression patterns.

Brady SM, Orlando DA, Lee JY, Wang JY, Koch J, Dinneny JR, Mace D, Ohler U, Benfey PN.

Science. 2007 Nov 2;318(5851):801-6.

9.

Nullomers: really a matter of natural selection?

Acquisti C, Poste G, Curtiss D, Kumar S.

PLoS One. 2007 Oct 10;2(10):e1022.

10.

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

Kilian J, Whitehead D, Horak J, Wanke D, Weinl S, Batistic O, D'Angelo C, Bornberg-Bauer E, Kudla J, Harter K.

Plant J. 2007 Apr;50(2):347-63. Epub 2007 Mar 21.

11.

Transcriptional profiling of the Arabidopsis embryo.

Spencer MW, Casson SA, Lindsey K.

Plant Physiol. 2007 Feb;143(2):924-40. Epub 2006 Dec 22. Erratum in: Plant Physiol. 2007 Apr;143(4):1982.

12.

AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.

Palaniswamy SK, James S, Sun H, Lamb RS, Davuluri RV, Grotewold E.

Plant Physiol. 2006 Mar;140(3):818-29.

14.

What transposable elements tell us about genome organization and evolution: the case of Drosophila.

Biémont C, Vieira C.

Cytogenet Genome Res. 2005;110(1-4):25-34. Review.

PMID:
16093655
15.

Identification of two evolutionarily conserved and functional regulatory elements in intron 2 of the human BRCA1 gene.

Wardrop SL, Brown MA; kConFab Investigators.

Genomics. 2005 Sep;86(3):316-28.

PMID:
15990270
16.
17.

Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana.

Zhang W, Ruan J, Ho TH, You Y, Yu T, Quatrano RS.

Bioinformatics. 2005 Jul 15;21(14):3074-81. Epub 2005 May 12.

18.

A gene expression map of Arabidopsis thaliana development.

Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Schölkopf B, Weigel D, Lohmann JU.

Nat Genet. 2005 May;37(5):501-6. Epub 2005 Apr 3.

PMID:
15806101
19.

Identification of transcription factor binding sites with variable-order Bayesian networks.

Ben-Gal I, Shani A, Gohr A, Grau J, Arviv S, Shmilovici A, Posch S, Grosse I.

Bioinformatics. 2005 Jun 1;21(11):2657-66. Epub 2005 Mar 29.

20.

Genome wide analysis of Arabidopsis core promoters.

Molina C, Grotewold E.

BMC Genomics. 2005 Feb 25;6:25.

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