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Items: 1 to 20 of 52

1.

Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures.

Chin MH, Mason MJ, Xie W, Volinia S, Singer M, Peterson C, Ambartsumyan G, Aimiuwu O, Richter L, Zhang J, Khvorostov I, Ott V, Grunstein M, Lavon N, Benvenisty N, Croce CM, Clark AT, Baxter T, Pyle AD, Teitell MA, Pelegrini M, Plath K, Lowry WE.

Cell Stem Cell. 2009 Jul 2;5(1):111-23. doi: 10.1016/j.stem.2009.06.008.

2.

Limitations and possibilities of small RNA digital gene expression profiling.

Linsen SE, de Wit E, Janssens G, Heater S, Chapman L, Parkin RK, Fritz B, Wyman SK, de Bruijn E, Voest EE, Kuersten S, Tewari M, Cuppen E.

Nat Methods. 2009 Jul;6(7):474-6. doi: 10.1038/nmeth0709-474. No abstract available.

PMID:
19564845
3.

Identifying novel constrained elements by exploiting biased substitution patterns.

Garber M, Guttman M, Clamp M, Zody MC, Friedman N, Xie X.

Bioinformatics. 2009 Jun 15;25(12):i54-62. doi: 10.1093/bioinformatics/btp190.

4.

Evolution under canalization and the dual roles of microRNAs: a hypothesis.

Wu CI, Shen Y, Tang T.

Genome Res. 2009 May;19(5):734-43. doi: 10.1101/gr.084640.108.

5.

MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells.

Xu N, Papagiannakopoulos T, Pan G, Thomson JA, Kosik KS.

Cell. 2009 May 15;137(4):647-58. doi: 10.1016/j.cell.2009.02.038. Epub 2009 Apr 30.

6.

Lowly expressed human microRNA genes evolve rapidly.

Liang H, Li WH.

Mol Biol Evol. 2009 Jun;26(6):1195-8. doi: 10.1093/molbev/msp053. Epub 2009 Mar 19.

7.

Essential and overlapping functions for mammalian Argonautes in microRNA silencing.

Su H, Trombly MI, Chen J, Wang X.

Genes Dev. 2009 Feb 1;23(3):304-17. doi: 10.1101/gad.1749809. Epub 2009 Jan 27.

8.

MicroRNAs: key regulators of stem cells.

Gangaraju VK, Lin H.

Nat Rev Mol Cell Biol. 2009 Feb;10(2):116-25. doi: 10.1038/nrm2621. Review.

9.

A human snoRNA with microRNA-like functions.

Ender C, Krek A, Friedländer MR, Beitzinger M, Weinmann L, Chen W, Pfeffer S, Rajewsky N, Meister G.

Mol Cell. 2008 Nov 21;32(4):519-28. doi: 10.1016/j.molcel.2008.10.017.

10.

Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs.

Landthaler M, Gaidatzis D, Rothballer A, Chen PY, Soll SJ, Dinic L, Ojo T, Hafner M, Zavolan M, Tuschl T.

RNA. 2008 Dec;14(12):2580-96. doi: 10.1261/rna.1351608. Epub 2008 Oct 31.

11.

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains.

Ku M, Koche RP, Rheinbay E, Mendenhall EM, Endoh M, Mikkelsen TS, Presser A, Nusbaum C, Xie X, Chi AS, Adli M, Kasif S, Ptaszek LM, Cowan CA, Lander ES, Koseki H, Bernstein BE.

PLoS Genet. 2008 Oct;4(10):e1000242. doi: 10.1371/journal.pgen.1000242. Epub 2008 Oct 31.

12.

Oct4/Sox2-regulated miR-302 targets cyclin D1 in human embryonic stem cells.

Card DA, Hebbar PB, Li L, Trotter KW, Komatsu Y, Mishina Y, Archer TK.

Mol Cell Biol. 2008 Oct;28(20):6426-38. doi: 10.1128/MCB.00359-08. Epub 2008 Aug 18.

13.

The impact of microRNAs on protein output.

Baek D, Villén J, Shin C, Camargo FD, Gygi SP, Bartel DP.

Nature. 2008 Sep 4;455(7209):64-71. doi: 10.1038/nature07242. Epub 2008 Jul 30.

14.

Evolutionary emergence of microRNAs in human embryonic stem cells.

Cao H, Yang CS, Rana TM.

PLoS One. 2008 Jul 30;3(7):e2820. doi: 10.1371/journal.pone.0002820.

15.

MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries.

Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M.

Stem Cells. 2008 Oct;26(10):2496-505. doi: 10.1634/stemcells.2008-0356. Epub 2008 Jun 26.

16.

Stem cell transcriptome profiling via massive-scale mRNA sequencing.

Cloonan N, Forrest AR, Kolle G, Gardiner BB, Faulkner GJ, Brown MK, Taylor DF, Steptoe AL, Wani S, Bethel G, Robertson AJ, Perkins AC, Bruce SJ, Lee CC, Ranade SS, Peckham HE, Manning JM, McKernan KJ, Grimmond SM.

Nat Methods. 2008 Jul;5(7):613-9. doi: 10.1038/nmeth.1223. Epub 2008 May 30.

PMID:
18516046
17.

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.

Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM.

Genome Res. 2008 Jul;18(7):1051-63. doi: 10.1101/gr.076463.108. Epub 2008 May 13.

18.

Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance.

Hendrickson DG, Hogan DJ, Herschlag D, Ferrell JE, Brown PO.

PLoS One. 2008 May 7;3(5):e2126. doi: 10.1371/journal.pone.0002126. Erratum in: PLoS ONE. 2008;3(11).doi.org/10.1371/annotation/c8902b4c-30fc-42e7-b506-fc756a3cdd4e.

19.

A multifunctional human Argonaute2-specific monoclonal antibody.

Rüdel S, Flatley A, Weinmann L, Kremmer E, Meister G.

RNA. 2008 Jun;14(6):1244-53. doi: 10.1261/rna.973808. Epub 2008 Apr 22.

20.

The Vienna RNA websuite.

Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W70-4. doi: 10.1093/nar/gkn188. Epub 2008 Apr 19.

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