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Items: 1 to 20 of 24

1.

Transmission networks of drug resistance acquired in primary/early stage HIV infection.

Brenner BG, Roger M, Moisi DD, Oliveira M, Hardy I, Turgel R, Charest H, Routy JP, Wainberg MA; Montreal PHI Cohort and HIV Prevention Study Groups..

AIDS. 2008 Nov 30;22(18):2509-15. doi: 10.1097/QAD.0b013e3283121c90.

2.

Rethinking the heterosexual infectivity of HIV-1: a systematic review and meta-analysis.

Powers KA, Poole C, Pettifor AE, Cohen MS.

Lancet Infect Dis. 2008 Sep;8(9):553-63. doi: 10.1016/S1473-3099(08)70156-7. Epub 2008 Aug 4. Review.

3.

Episodic sexual transmission of HIV revealed by molecular phylodynamics.

Lewis F, Hughes GJ, Rambaut A, Pozniak A, Leigh Brown AJ.

PLoS Med. 2008 Mar 18;5(3):e50. doi: 10.1371/journal.pmed.0050050.

4.

BEAST: Bayesian evolutionary analysis by sampling trees.

Drummond AJ, Rambaut A.

BMC Evol Biol. 2007 Nov 8;7:214.

5.

Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1.

Gifford RJ, de Oliveira T, Rambaut A, Pybus OG, Dunn D, Vandamme AM, Kellam P, Pillay D; UK Collaborative Group on HIV Drug Resistance..

J Virol. 2007 Dec;81(23):13050-6. Epub 2007 Sep 26.

6.

CD4 cell count and initiation of antiretroviral therapy: trends in seven UK centres, 1997-2003.

Stöhr W, Dunn D, Porter K, Hill T, Gazzard B, Walsh J, Gilson R, Easterbrook P, Fisher M, Johnson M, Delpech V, Phillips A, Sabin C; UK CHIC Study..

HIV Med. 2007 Apr;8(3):135-41.

7.

Relaxed phylogenetics and dating with confidence.

Drummond AJ, Ho SY, Phillips MJ, Rambaut A.

PLoS Biol. 2006 May;4(5):e88. Epub 2006 Mar 14.

8.

Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences.

Shapiro B, Rambaut A, Drummond AJ.

Mol Biol Evol. 2006 Jan;23(1):7-9. Epub 2005 Sep 21.

PMID:
16177232
9.

An automated genotyping system for analysis of HIV-1 and other microbial sequences.

de Oliveira T, Deforche K, Cassol S, Salminen M, Paraskevis D, Seebregts C, Snoeck J, van Rensburg EJ, Wensing AM, van de Vijver DA, Boucher CA, Camacho R, Vandamme AM.

Bioinformatics. 2005 Oct 1;21(19):3797-800. Epub 2005 Aug 2.

PMID:
16076886
10.

HyPhy: hypothesis testing using phylogenies.

Pond SL, Frost SD, Muse SV.

Bioinformatics. 2005 Mar 1;21(5):676-9. Epub 2004 Oct 27.

PMID:
15509596
11.

Surveillance of HIV-1 subtypes among heterosexuals in England and Wales, 1997-2000.

Tatt ID, Barlow KL, Clewley JP, Gill ON, Parry JV.

J Acquir Immune Defic Syndr. 2004 Aug 15;36(5):1092-9.

PMID:
15247563
12.

Brief but efficient: acute HIV infection and the sexual transmission of HIV.

Pilcher CD, Tien HC, Eron JJ Jr, Vernazza PL, Leu SY, Stewart PW, Goh LE, Cohen MS; Quest Study.; Duke-UNC-Emory Acute HIV Consortium..

J Infect Dis. 2004 May 15;189(10):1785-92. Epub 2004 Apr 28.

PMID:
15122514
13.
14.

MRBAYES: Bayesian inference of phylogenetic trees.

Huelsenbeck JP, Ronquist F.

Bioinformatics. 2001 Aug;17(8):754-5.

PMID:
11524383
15.

The web of human sexual contacts.

Liljeros F, Edling CR, Amaral LA, Stanley HE, Aberg Y.

Nature. 2001 Jun 21;411(6840):907-8. No abstract available.

PMID:
11418846
16.

Bayesian selection of continuous-time Markov chain evolutionary models.

Suchard MA, Weiss RE, Sinsheimer JS.

Mol Biol Evol. 2001 Jun;18(6):1001-13.

PMID:
11371589
17.

National surveillance of HIV-1 subtypes for England and Wales: design, methods, and initial findings.

Parry JV, Murphy G, Barlow KL, Lewis K, Rogers PA, Belda FJ, Nicoll A, McGarrigle C, Cliffe S, Mortimer PP, Clewley JP.

J Acquir Immune Defic Syndr. 2001 Apr 1;26(4):381-8.

PMID:
11317083
19.

The molecular epidemiology of human immunodeficiency virus type 1 in six cities in Britain and Ireland.

Brown AJ, Lobidel D, Wade CM, Rebus S, Phillips AN, Brettle RP, France AJ, Leen CS, McMenamin J, McMillan A, Maw RD, Mulcahy F, Robertson JR, Sankar KN, Scott G, Wyld R, Peutherer JF.

Virology. 1997 Aug 18;235(1):166-77.

20.

At least five HIV-1 sequence subtypes (A, B, C, D, A/E) occur in England.

Arnold C, Barlow KL, Parry JV, Clewley JP.

AIDS Res Hum Retroviruses. 1995 Mar;11(3):427-9. No abstract available.

PMID:
7786589

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