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Items: 1 to 20 of 63

1.

A changing gastric environment leads to adaptation of lipopolysaccharide variants in Helicobacter pylori populations during colonization.

Skoglund A, Bäckhed HK, Nilsson C, Björkholm B, Normark S, Engstrand L.

PLoS One. 2009 Jun 11;4(6):e5885. doi: 10.1371/journal.pone.0005885.

2.

Integrative approach for differentially overexpressed genes in gastric cancer by combining large-scale gene expression profiling and network analysis.

Takeno A, Takemasa I, Doki Y, Yamasaki M, Miyata H, Takiguchi S, Fujiwara Y, Matsubara K, Monden M.

Br J Cancer. 2008 Oct 21;99(8):1307-15. doi: 10.1038/sj.bjc.6604682. Epub 2008 Sep 30.

3.

Predicting gene targets of perturbations via network-based filtering of mRNA expression compendia.

Cosgrove EJ, Zhou Y, Gardner TS, Kolaczyk ED.

Bioinformatics. 2008 Nov 1;24(21):2482-90. doi: 10.1093/bioinformatics/btn476. Epub 2008 Sep 8.

4.

Helicobacter pylori infection stimulates plasminogen activator inhibitor 1 production by gastric epithelial cells.

Keates AC, Tummala S, Peek RM Jr, Csizmadia E, Kunzli B, Becker K, Correa P, Romero-Gallo J, Piazuelo MB, Sheth S, Kelly CP, Robson SC, Keates S.

Infect Immun. 2008 Sep;76(9):3992-9. doi: 10.1128/IAI.00584-08. Epub 2008 Jun 2.

5.

The plasminogen activator inhibitor "paradox" in cancer.

Binder BR, Mihaly J.

Immunol Lett. 2008 Jun 30;118(2):116-24. doi: 10.1016/j.imlet.2008.03.017. Epub 2008 May 2. Review.

PMID:
18495253
6.

Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Zerbino DR, Birney E.

Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.

7.

Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells.

Giannakis M, Chen SL, Karam SM, Engstrand L, Gordon JI.

Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4358-63. doi: 10.1073/pnas.0800668105. Epub 2008 Mar 10.

8.

The tyrosine phosphatase Shp2 (PTPN11) in cancer.

Chan G, Kalaitzidis D, Neel BG.

Cancer Metastasis Rev. 2008 Jun;27(2):179-92. doi: 10.1007/s10555-008-9126-y. Review.

PMID:
18286234
9.

Relationship between Helicobacter pylori infection and esophageal neoplasia: a meta-analysis.

Rokkas T, Pistiolas D, Sechopoulos P, Robotis I, Margantinis G.

Clin Gastroenterol Hepatol. 2007 Dec;5(12):1413-7, 1417.e1-2. Epub 2007 Nov 7. Review.

PMID:
17997357
10.

The equilibria that allow bacterial persistence in human hosts.

Blaser MJ, Kirschner D.

Nature. 2007 Oct 18;449(7164):843-9.

11.

Genes under positive selection in Escherichia coli.

Petersen L, Bollback JP, Dimmic M, Hubisz M, Nielsen R.

Genome Res. 2007 Sep;17(9):1336-43. Epub 2007 Aug 3.

12.

Expression of ornithine decarboxylase in precancerous and cancerous gastric lesions.

Miao XP, Li JS, Li HY, Zeng SP, Zhao Y, Zeng JZ.

World J Gastroenterol. 2007 May 28;13(20):2867-71.

13.

PAML 4: phylogenetic analysis by maximum likelihood.

Yang Z.

Mol Biol Evol. 2007 Aug;24(8):1586-91. Epub 2007 May 4.

PMID:
17483113
14.

Inverse associations of Helicobacter pylori with asthma and allergy.

Chen Y, Blaser MJ.

Arch Intern Med. 2007 Apr 23;167(8):821-7.

PMID:
17452546
15.

Assessing the reliability of eBURST using simulated populations with known ancestry.

Turner KM, Hanage WP, Fraser C, Connor TR, Spratt BG.

BMC Microbiol. 2007 Apr 12;7:30.

16.

Intracellular, intercellular, and stromal invasion of gastric mucosa, preneoplastic lesions, and cancer by Helicobacter pylori.

Necchi V, Candusso ME, Tava F, Luinetti O, Ventura U, Fiocca R, Ricci V, Solcia E.

Gastroenterology. 2007 Mar;132(3):1009-23. Epub 2007 Jan 31.

PMID:
17383424
17.

Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli.

Dwyer DJ, Kohanski MA, Hayete B, Collins JJ.

Mol Syst Biol. 2007;3:91. Epub 2007 Mar 13.

18.

Genetic factors involved in the development of Helicobacter pylori-related gastric cancer.

Hamajima N, Naito M, Kondo T, Goto Y.

Cancer Sci. 2006 Nov;97(11):1129-38. Epub 2006 Aug 1. Review.

19.

The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression.

Oh JD, Kling-Bäckhed H, Giannakis M, Xu J, Fulton RS, Fulton LA, Cordum HS, Wang C, Elliott G, Edwards J, Mardis ER, Engstrand LG, Gordon JI.

Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9999-10004. Epub 2006 Jun 20.

20.

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.

Li W, Godzik A.

Bioinformatics. 2006 Jul 1;22(13):1658-9. Epub 2006 May 26.

PMID:
16731699

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