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Items: 1 to 20 of 40

1.

KEGG spider: interpretation of genomics data in the context of the global gene metabolic network.

Antonov AV, Dietmann S, Mewes HW.

Genome Biol. 2008;9(12):R179. doi: 10.1186/gb-2008-9-12-r179. Epub 2008 Dec 18.

2.

A unified approach to false discovery rate estimation.

Strimmer K.

BMC Bioinformatics. 2008 Jul 9;9:303. doi: 10.1186/1471-2105-9-303.

3.

Multiple ADH genes are associated with upper aerodigestive cancers.

Hashibe M, McKay JD, Curado MP, Oliveira JC, Koifman S, Koifman R, Zaridze D, Shangina O, Wünsch-Filho V, Eluf-Neto J, Levi JE, Matos E, Lagiou P, Lagiou A, Benhamou S, Bouchardy C, Szeszenia-Dabrowska N, Menezes A, Dall'Agnol MM, Merletti F, Richiardi L, Fernandez L, Lence J, Talamini R, Barzan L, Mates D, Mates IN, Kjaerheim K, Macfarlane GJ, Macfarlane TV, Simonato L, Canova C, Holcátová I, Agudo A, Castellsagué X, Lowry R, Janout V, Kollarova H, Conway DI, McKinney PA, Znaor A, Fabianova E, Bencko V, Lissowska J, Chabrier A, Hung RJ, Gaborieau V, Boffetta P, Brennan P.

Nat Genet. 2008 Jun;40(6):707-9. doi: 10.1038/ng.151. Epub 2008 May 25.

4.

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates.

Strimmer K.

Bioinformatics. 2008 Jun 15;24(12):1461-2. doi: 10.1093/bioinformatics/btn209. Epub 2008 Apr 25.

PMID:
18441000
5.

AKR1B10 in usual interstitial pneumonia: expression in squamous metaplasia in association with smoking and lung cancer.

Li CP, Goto A, Watanabe A, Murata K, Ota S, Niki T, Aburatani H, Fukayama M.

Pathol Res Pract. 2008;204(5):295-304. doi: 10.1016/j.prp.2006.12.012. Epub 2008 Mar 20.

PMID:
18358633
6.

Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival.

Landi MT, Dracheva T, Rotunno M, Figueroa JD, Liu H, Dasgupta A, Mann FE, Fukuoka J, Hames M, Bergen AW, Murphy SE, Yang P, Pesatori AC, Consonni D, Bertazzi PA, Wacholder S, Shih JH, Caporaso NE, Jen J.

PLoS One. 2008 Feb 20;3(2):e1651. doi: 10.1371/journal.pone.0001651.

7.

Overexpression of macrophage migration inhibitory factor induces angiogenesis in human breast cancer.

Xu X, Wang B, Ye C, Yao C, Lin Y, Huang X, Zhang Y, Wang S.

Cancer Lett. 2008 Mar 18;261(2):147-57. doi: 10.1016/j.canlet.2007.11.028. Epub 2008 Jan 2.

PMID:
18171602
8.

VEGF is differentially regulated in multiple myeloma-derived cell lines by norepinephrine.

Yang EV, Donovan EL, Benson DM, Glaser R.

Brain Behav Immun. 2008 Mar;22(3):318-23. Epub 2007 Nov 5.

9.

Neuroendocrine modulation of signal transducer and activator of transcription-3 in ovarian cancer.

Landen CN Jr, Lin YG, Armaiz Pena GN, Das PD, Arevalo JM, Kamat AA, Han LY, Jennings NB, Spannuth WA, Thaker PH, Lutgendorf SK, Savary CA, Sanguino AM, Lopez-Berestein G, Cole SW, Sood AK.

Cancer Res. 2007 Nov 1;67(21):10389-96.

10.

Graphs in molecular biology.

Huber W, Carey VJ, Long L, Falcon S, Gentleman R.

BMC Bioinformatics. 2007 Sep 27;8 Suppl 6:S8. Review.

11.

PathExpress: a web-based tool to identify relevant pathways in gene expression data.

Goffard N, Weiller G.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W176-81. Epub 2007 Jun 22.

12.

KAAS: an automatic genome annotation and pathway reconstruction server.

Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. Epub 2007 May 25.

13.

Alcohol metabolism, alcohol intake, and breast cancer risk: a sister-set analysis using the Breast Cancer Family Registry.

Terry MB, Knight JA, Zablotska L, Wang Q, John EM, Andrulis IL, Senie RT, Daly M, Ozcelik H, Briollais L, Santella RM.

Breast Cancer Res Treat. 2007 Dec;106(2):281-8. Epub 2007 Feb 1.

PMID:
17268812
14.

[Transcription TIMP3, DAPk1 and AKR1B10 genes in squamous cell lung cancer].

Mashkova TD, Oparina NIu, Zinov'eva OL, Kropotova ES, Dubovaia VI, Poltaraus AB, Fridman MV, Kopantsev EP, Vinogradova TV, Zinov'eva MV, Laktionov KK, Kasymova OT, Zborovskaia IB, Sverdlov ED, Kiselev LL.

Mol Biol (Mosk). 2006 Nov-Dec;40(6):1047-54. Russian.

PMID:
17209433
15.

Norepinephrine up-regulates the expression of vascular endothelial growth factor, matrix metalloproteinase (MMP)-2, and MMP-9 in nasopharyngeal carcinoma tumor cells.

Yang EV, Sood AK, Chen M, Li Y, Eubank TD, Marsh CB, Jewell S, Flavahan NA, Morrison C, Yeh PE, Lemeshow S, Glaser R.

Cancer Res. 2006 Nov 1;66(21):10357-64.

16.

Interactive effects of lifetime alcohol consumption and alcohol and aldehyde dehydrogenase polymorphisms on esophageal cancer risks.

Chen YJ, Chen C, Wu DC, Lee CH, Wu CI, Lee JM, Goan YG, Huang SP, Lin CC, Li TC, Chou YP, Wu MT.

Int J Cancer. 2006 Dec 15;119(12):2827-31.

17.

KOBAS server: a web-based platform for automated annotation and pathway identification.

Wu J, Mao X, Cai T, Luo J, Wei L.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W720-4.

18.

Assessing semantic similarity measures for the characterization of human regulatory pathways.

Guo X, Liu R, Shriver CD, Hu H, Liebman MN.

Bioinformatics. 2006 Apr 15;22(8):967-73. Epub 2006 Feb 21.

PMID:
16492685
19.

Stress hormone-mediated invasion of ovarian cancer cells.

Sood AK, Bhatty R, Kamat AA, Landen CN, Han L, Thaker PH, Li Y, Gershenson DM, Lutgendorf S, Cole SW.

Clin Cancer Res. 2006 Jan 15;12(2):369-75.

20.

From genomics to chemical genomics: new developments in KEGG.

Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D354-7.

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