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Items: 1 to 20 of 37

1.

Genome-wide profiling of salt fractions maps physical properties of chromatin.

Henikoff S, Henikoff JG, Sakai A, Loeb GB, Ahmad K.

Genome Res. 2009 Mar;19(3):460-9. doi: 10.1101/gr.087619.108. Epub 2008 Dec 16.

2.

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains.

Cuddapah S, Jothi R, Schones DE, Roh TY, Cui K, Zhao K.

Genome Res. 2009 Jan;19(1):24-32. doi: 10.1101/gr.082800.108. Epub 2008 Dec 3.

3.

H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment.

Creyghton MP, Markoulaki S, Levine SS, Hanna J, Lodato MA, Sha K, Young RA, Jaenisch R, Boyer LA.

Cell. 2008 Nov 14;135(4):649-61. doi: 10.1016/j.cell.2008.09.056. Epub 2008 Nov 6.

4.

The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis.

Whittle CM, McClinic KN, Ercan S, Zhang X, Green RD, Kelly WG, Lieb JD.

PLoS Genet. 2008 Sep 12;4(9):e1000187. doi: 10.1371/journal.pgen.1000187.

5.

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome.

Fu Y, Sinha M, Peterson CL, Weng Z.

PLoS Genet. 2008 Jul 25;4(7):e1000138. doi: 10.1371/journal.pgen.1000138.

6.

Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci.

Petesch SJ, Lis JT.

Cell. 2008 Jul 11;134(1):74-84. doi: 10.1016/j.cell.2008.05.029.

7.

Nucleosome organization in the Drosophila genome.

Mavrich TN, Jiang C, Ioshikhes IP, Li X, Venters BJ, Zanton SJ, Tomsho LP, Qi J, Glaser RL, Schuster SC, Gilmour DS, Albert I, Pugh BF.

Nature. 2008 May 15;453(7193):358-62. doi: 10.1038/nature06929. Epub 2008 Apr 13.

8.

Dynamic regulation of nucleosome positioning in the human genome.

Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K.

Cell. 2008 Mar 7;132(5):887-98. doi: 10.1016/j.cell.2008.02.022.

9.

Nucleosome destabilization in the epigenetic regulation of gene expression.

Henikoff S.

Nat Rev Genet. 2008 Jan;9(1):15-26. Review.

PMID:
18059368
10.

A chromatin landmark and transcription initiation at most promoters in human cells.

Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA.

Cell. 2007 Jul 13;130(1):77-88.

11.

Nucleosome stability mediated by histone variants H3.3 and H2A.Z.

Jin C, Felsenfeld G.

Genes Dev. 2007 Jun 15;21(12):1519-29.

12.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foissac S, Alioto T, Brent M, Pachter L, Tress ML, Valencia A, Choo SW, Choo CY, Ucla C, Manzano C, Wyss C, Cheung E, Clark TG, Brown JB, Ganesh M, Patel S, Tammana H, Chrast J, Henrichsen CN, Kai C, Kawai J, Nagalakshmi U, Wu J, Lian Z, Lian J, Newburger P, Zhang X, Bickel P, Mattick JS, Carninci P, Hayashizaki Y, Weissman S, Hubbard T, Myers RM, Rogers J, Stadler PF, Lowe TM, Wei CL, Ruan Y, Struhl K, Gerstein M, Antonarakis SE, Fu Y, Green ED, Karaöz U, Siepel A, Taylor J, Liefer LA, Wetterstrand KA, Good PJ, Feingold EA, Guyer MS, Cooper GM, Asimenos G, Dewey CN, Hou M, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Huang H, Zhang NR, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Seringhaus M, Church D, Rosenbloom K, Kent WJ, Stone EA; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute, Batzoglou S, Goldman N, Hardison RC, Haussler D, Miller W, Sidow A, Trinklein ND, Zhang ZD, Barrera L, Stuart R, King DC, Ameur A, Enroth S, Bieda MC, Kim J, Bhinge AA, Jiang N, Liu J, Yao F, Vega VB, Lee CW, Ng P, Shahab A, Yang A, Moqtaderi Z, Zhu Z, Xu X, Squazzo S, Oberley MJ, Inman D, Singer MA, Richmond TA, Munn KJ, Rada-Iglesias A, Wallerman O, Komorowski J, Fowler JC, Couttet P, Bruce AW, Dovey OM, Ellis PD, Langford CF, Nix DA, Euskirchen G, Hartman S, Urban AE, Kraus P, Van Calcar S, Heintzman N, Kim TH, Wang K, Qu C, Hon G, Luna R, Glass CK, Rosenfeld MG, Aldred SF, Cooper SJ, Halees A, Lin JM, Shulha HP, Zhang X, Xu M, Haidar JN, Yu Y, Ruan Y, Iyer VR, Green RD, Wadelius C, Farnham PJ, Ren B, Harte RA, Hinrichs AS, Trumbower H, Clawson H, Hillman-Jackson J, Zweig AS, Smith K, Thakkapallayil A, Barber G, Kuhn RM, Karolchik D, Armengol L, Bird CP, de Bakker PI, Kern AD, Lopez-Bigas N, Martin JD, Stranger BE, Woodroffe A, Davydov E, Dimas A, Eyras E, Hallgrímsdóttir IB, Huppert J, Zody MC, Abecasis GR, Estivill X, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Koriabine M, Nefedov M, Osoegawa K, Yoshinaga Y, Zhu B, de Jong PJ.

Nature. 2007 Jun 14;447(7146):799-816.

13.

High-resolution profiling of histone methylations in the human genome.

Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K.

Cell. 2007 May 18;129(4):823-37.

14.

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF.

Nature. 2007 Mar 29;446(7135):572-6.

PMID:
17392789
15.

Histone replacement marks the boundaries of cis-regulatory domains.

Mito Y, Henikoff JG, Henikoff S.

Science. 2007 Mar 9;315(5817):1408-11.

16.

High-throughput mapping of the chromatin structure of human promoters.

Ozsolak F, Song JS, Liu XS, Fisher DE.

Nat Biotechnol. 2007 Feb;25(2):244-8. Epub 2007 Jan 14.

PMID:
17220878
17.

New histone incorporation marks sites of UV repair in human cells.

Polo SE, Roche D, Almouzni G.

Cell. 2006 Nov 3;127(3):481-93.

18.

PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state.

Loyola A, Bonaldi T, Roche D, Imhof A, Almouzni G.

Mol Cell. 2006 Oct 20;24(2):309-16.

19.

DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays.

Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, Erdos MR, Green R, Meltzer PS, Wolfsberg TG, Collins FS.

Nat Methods. 2006 Jul;3(7):503-9.

20.

Distribution of histone H3.3 in hematopoietic cell lineages.

Jin C, Felsenfeld G.

Proc Natl Acad Sci U S A. 2006 Jan 17;103(3):574-9. Epub 2006 Jan 5.

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