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Items: 1 to 20 of 44

1.
2.

Refining motifs by improving information content scores using neighborhood profile search.

Reddy CK, Weng YC, Chiang HD.

Algorithms Mol Biol. 2006 Nov 27;1:23.

3.

A bi-dimensional regression tree approach to the modeling of gene expression regulation.

Ruan J, Zhang W.

Bioinformatics. 2006 Feb 1;22(3):332-40. Epub 2005 Nov 22.

PMID:
16303796
4.
5.

Predicting genetic regulatory response using classification.

Middendorf M, Kundaje A, Wiggins C, Freund Y, Leslie C.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i232-40.

PMID:
15262804
6.
7.

Predicting gene expression from sequence.

Beer MA, Tavazoie S.

Cell. 2004 Apr 16;117(2):185-98.

8.

Combining pattern discovery and discriminant analysis to predict gene co-regulation.

Simonis N, Wodak SJ, Cohen GN, van Helden J.

Bioinformatics. 2004 Oct 12;20(15):2370-9. Epub 2004 Apr 8.

PMID:
15073004
9.

Regression trees for regulatory element identification.

Phuong TM, Lee D, Lee KH.

Bioinformatics. 2004 Mar 22;20(5):750-7. Epub 2004 Jan 29.

PMID:
14751992
10.

Identifying cooperativity among transcription factors controlling the cell cycle in yeast.

Banerjee N, Zhang MQ.

Nucleic Acids Res. 2003 Dec 1;31(23):7024-31.

11.

Discovery of significant rules for classifying cancer diagnosis data.

Li J, Liu H, Ng SK, Wong L.

Bioinformatics. 2003 Oct;19 Suppl 2:ii93-102.

PMID:
14534178
12.

Continuous representations of time-series gene expression data.

Bar-Joseph Z, Gerber GK, Gifford DK, Jaakkola TS, Simon I.

J Comput Biol. 2003;10(3-4):341-56.

PMID:
12935332
13.

Genome-wide discovery of transcriptional modules from DNA sequence and gene expression.

Segal E, Yelensky R, Koller D.

Bioinformatics. 2003;19 Suppl 1:i273-82.

PMID:
12855470
14.

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.

Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N.

Nat Genet. 2003 Jun;34(2):166-76.

PMID:
12740579
15.

On schemes of combinatorial transcription logic.

Buchler NE, Gerland U, Hwa T.

Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5136-41. Epub 2003 Apr 17.

16.

Integrating regulatory motif discovery and genome-wide expression analysis.

Conlon EM, Liu XS, Lieb JD, Liu JS.

Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3339-44. Epub 2003 Mar 7.

17.

Towards reconstruction of gene networks from expression data by supervised learning.

Soinov LA, Krestyaninova MA, Brazma A.

Genome Biol. 2003;4(1):R6. Epub 2003 Jan 6.

19.

Transcriptional regulatory networks and the yeast cell cycle.

Futcher B.

Curr Opin Cell Biol. 2002 Dec;14(6):676-83. Review.

PMID:
12473339
20.

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

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