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Items: 1 to 20 of 46

1.

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis.

Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM.

Nucleic Acids Res. 2009 Jan;37(Database issue):D141-5. doi: 10.1093/nar/gkn879. Epub 2008 Nov 12.

2.

Ribosomal RNAs are tolerant toward genetic insertions: evolutionary origin of the expansion segments.

Yokoyama T, Suzuki T.

Nucleic Acids Res. 2008 Jun;36(11):3539-51. doi: 10.1093/nar/gkn224. Epub 2008 May 2.

3.

Intragenomic variation and evolution of the internal transcribed spacer of the rRNA operon in bacteria.

Stewart FJ, Cavanaugh CM.

J Mol Evol. 2007 Jul;65(1):44-67. Epub 2007 Jun 12.

PMID:
17568983
4.

Finely orchestrated movements: evolution of the ribosomal RNA genes.

Eickbush TH, Eickbush DG.

Genetics. 2007 Feb;175(2):477-85. Review.

5.

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL.

Appl Environ Microbiol. 2006 Jul;72(7):5069-72.

6.

Evaluation of 23S rRNA PCR primers for use in phylogenetic studies of bacterial diversity.

Hunt DE, Klepac-Ceraj V, Acinas SG, Gautier C, Bertilsson S, Polz MF.

Appl Environ Microbiol. 2006 Mar;72(3):2221-5.

7.

Bacterial ribosomal RNA in pieces.

Evguenieva-Hackenberg E.

Mol Microbiol. 2005 Jul;57(2):318-25. Review.

8.

Diversity of the human intestinal microbial flora.

Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, Gill SR, Nelson KE, Relman DA.

Science. 2005 Jun 10;308(5728):1635-8. Epub 2005 Apr 14.

9.

Gene conversion and concerted evolution in bacterial genomes.

Santoyo G, Romero D.

FEMS Microbiol Rev. 2005 Apr;29(2):169-83. Review.

10.

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure.

Mathews DH, Disney MD, Childs JL, Schroeder SJ, Zuker M, Turner DH.

Proc Natl Acad Sci U S A. 2004 May 11;101(19):7287-92. Epub 2004 May 3.

11.

Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.

Acinas SG, Marcelino LA, Klepac-Ceraj V, Polz MF.

J Bacteriol. 2004 May;186(9):2629-35.

12.

Bacterial biota in the human distal esophagus.

Pei Z, Bini EJ, Yang L, Zhou M, Francois F, Blaser MJ.

Proc Natl Acad Sci U S A. 2004 Mar 23;101(12):4250-5. Epub 2004 Mar 11.

13.
14.

The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens.

Duchaud E, Rusniok C, Frangeul L, Buchrieser C, Givaudan A, Taourit S, Bocs S, Boursaux-Eude C, Chandler M, Charles JF, Dassa E, Derose R, Derzelle S, Freyssinet G, Gaudriault S, M├ędigue C, Lanois A, Powell K, Siguier P, Vincent R, Wingate V, Zouine M, Glaser P, Boemare N, Danchin A, Kunst F.

Nat Biotechnol. 2003 Nov;21(11):1307-13. Epub 2003 Oct 5.

PMID:
14528314
15.

A complete sequence of the T. tengcongensis genome.

Bao Q, Tian Y, Li W, Xu Z, Xuan Z, Hu S, Dong W, Yang J, Chen Y, Xue Y, Xu Y, Lai X, Huang L, Dong X, Ma Y, Ling L, Tan H, Chen R, Wang J, Yu J, Yang H.

Genome Res. 2002 May;12(5):689-700.

17.

Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA.

Wuyts J, Van de Peer Y, De Wachter R.

Nucleic Acids Res. 2001 Dec 15;29(24):5017-28.

18.

Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120.

Kaneko T, Nakamura Y, Wolk CP, Kuritz T, Sasamoto S, Watanabe A, Iriguchi M, Ishikawa A, Kawashima K, Kimura T, Kishida Y, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakazaki N, Shimpo S, Sugimoto M, Takazawa M, Yamada M, Yasuda M, Tabata S.

DNA Res. 2001 Oct 31;8(5):205-13; 227-53.

PMID:
11759840
19.

The genome of the natural genetic engineer Agrobacterium tumefaciens C58.

Wood DW, Setubal JC, Kaul R, Monks DE, Kitajima JP, Okura VK, Zhou Y, Chen L, Wood GE, Almeida NF Jr, Woo L, Chen Y, Paulsen IT, Eisen JA, Karp PD, Bovee D Sr, Chapman P, Clendenning J, Deatherage G, Gillet W, Grant C, Kutyavin T, Levy R, Li MJ, McClelland E, Palmieri A, Raymond C, Rouse G, Saenphimmachak C, Wu Z, Romero P, Gordon D, Zhang S, Yoo H, Tao Y, Biddle P, Jung M, Krespan W, Perry M, Gordon-Kamm B, Liao L, Kim S, Hendrick C, Zhao ZY, Dolan M, Chumley F, Tingey SV, Tomb JF, Gordon MP, Olson MV, Nester EW.

Science. 2001 Dec 14;294(5550):2317-23.

20.

Complete genome sequence of Salmonella enterica serovar Typhimurium LT2.

McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, Courtney L, Porwollik S, Ali J, Dante M, Du F, Hou S, Layman D, Leonard S, Nguyen C, Scott K, Holmes A, Grewal N, Mulvaney E, Ryan E, Sun H, Florea L, Miller W, Stoneking T, Nhan M, Waterston R, Wilson RK.

Nature. 2001 Oct 25;413(6858):852-6.

PMID:
11677609

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