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Items: 1 to 20 of 26

1.

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database.

Eng JK, McCormack AL, Yates JR.

J Am Soc Mass Spectrom. 1994 Nov;5(11):976-89. doi: 10.1016/1044-0305(94)80016-2.

PMID:
24226387
2.

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.

BMC Bioinformatics. 2008 Dec 16;9:542. doi: 10.1186/1471-2105-9-542.

3.

Interpretation of large-scale quantitative shotgun proteomic profiles for biomarker discovery.

Isserlin R, Emili A.

Curr Opin Mol Ther. 2008 Jun;10(3):231-42. Review.

PMID:
18535930
4.

Accurate inclusion mass screening: a bridge from unbiased discovery to targeted assay development for biomarker verification.

Jaffe JD, Keshishian H, Chang B, Addona TA, Gillette MA, Carr SA.

Mol Cell Proteomics. 2008 Oct;7(10):1952-62. doi: 10.1074/mcp.M800218-MCP200. Epub 2008 Jun 4.

5.

Mass defect profiles of biological matrices and the general applicability of mass defect filtering for metabolite detection.

Zhang H, Zhu M, Ray KL, Ma L, Zhang D.

Rapid Commun Mass Spectrom. 2008 Jul;22(13):2082-8. doi: 10.1002/rcm.3585.

PMID:
18512844
6.

An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures.

Schmidt A, Gehlenborg N, Bodenmiller B, Mueller LN, Campbell D, Mueller M, Aebersold R, Domon B.

Mol Cell Proteomics. 2008 Nov;7(11):2138-50. doi: 10.1074/mcp.M700498-MCP200. Epub 2008 May 29.

7.

Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring.

Lange V, Malmström JA, Didion J, King NL, Johansson BP, Schäfer J, Rameseder J, Wong CH, Deutsch EW, Brusniak MY, Bühlmann P, Björck L, Domon B, Aebersold R.

Mol Cell Proteomics. 2008 Aug;7(8):1489-500. doi: 10.1074/mcp.M800032-MCP200. Epub 2008 Apr 13.

8.

Label-free LC-MS method for the identification of biomarkers.

Higgs RE, Knierman MD, Gelfanova V, Butler JP, Hale JE.

Methods Mol Biol. 2008;428:209-30.

PMID:
18287776
9.

Pseudo internal standard approach for label-free quantitative proteomics.

Tabata T, Sato T, Kuromitsu J, Oda Y.

Anal Chem. 2007 Nov 15;79(22):8440-5. Epub 2007 Oct 12.

PMID:
17929902
10.

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.

Mueller LN, Rinner O, Schmidt A, Letarte S, Bodenmiller B, Brusniak MY, Vitek O, Aebersold R, Müller M.

Proteomics. 2007 Oct;7(19):3470-80.

PMID:
17726677
11.

High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites.

Stahl-Zeng J, Lange V, Ossola R, Eckhardt K, Krek W, Aebersold R, Domon B.

Mol Cell Proteomics. 2007 Oct;6(10):1809-17. Epub 2007 Jul 20.

12.

Isolation of N-linked glycopeptides from plasma.

Zhou Y, Aebersold R, Zhang H.

Anal Chem. 2007 Aug 1;79(15):5826-37. Epub 2007 Jun 26.

PMID:
17591751
13.

Reproducibility assessment of relative quantitation strategies for LC-MS based proteomics.

Kim YJ, Zhan P, Feild B, Ruben SM, He T.

Anal Chem. 2007 Aug 1;79(15):5651-8. Epub 2007 Jun 20.

PMID:
17580949
14.
15.

Development and validation of a spectral library searching method for peptide identification from MS/MS.

Lam H, Deutsch EW, Eddes JS, Eng JK, King N, Stein SE, Aebersold R.

Proteomics. 2007 Mar;7(5):655-67.

PMID:
17295354
16.

Isolation of glycoproteins and identification of their N-linked glycosylation sites.

Zhang H, Aebersold R.

Methods Mol Biol. 2006;328:177-85.

PMID:
16785649
17.

Enhancing electrospray ionization efficiency of peptides by derivatization.

Mirzaei H, Regnier F.

Anal Chem. 2006 Jun 15;78(12):4175-83.

PMID:
16771548
18.

Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides.

Beynon RJ, Doherty MK, Pratt JM, Gaskell SJ.

Nat Methods. 2005 Aug;2(8):587-9.

PMID:
16094383
19.

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

Old WM, Meyer-Arendt K, Aveline-Wolf L, Pierce KG, Mendoza A, Sevinsky JR, Resing KA, Ahn NG.

Mol Cell Proteomics. 2005 Oct;4(10):1487-502. Epub 2005 Jun 23.

20.

The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications.

Kirkpatrick DS, Gerber SA, Gygi SP.

Methods. 2005 Mar;35(3):265-73. Epub 2005 Jan 12.

PMID:
15722223

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