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Innate immunity and intestinal microbiota in the development of Type 1 diabetes.

Wen L, Ley RE, Volchkov PY, Stranges PB, Avanesyan L, Stonebraker AC, Hu C, Wong FS, Szot GL, Bluestone JA, Gordon JI, Chervonsky AV.

Nature. 2008 Oct 23;455(7216):1109-13. doi: 10.1038/nature07336. Epub 2008 Sep 21.


Human colonic microbiota associated with diet, obesity and weight loss.

Duncan SH, Lobley GE, Holtrop G, Ince J, Johnstone AM, Louis P, Flint HJ.

Int J Obes (Lond). 2008 Nov;32(11):1720-4. doi: 10.1038/ijo.2008.155. Epub 2008 Sep 9.


Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome.

Jones BV, Begley M, Hill C, Gahan CG, Marchesi JR.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13580-5. doi: 10.1073/pnas.0804437105. Epub 2008 Aug 29.


Predominant role of host genetics in controlling the composition of gut microbiota.

Khachatryan ZA, Ktsoyan ZA, Manukyan GP, Kelly D, Ghazaryan KA, Aminov RI.

PLoS One. 2008 Aug 26;3(8):e3064. doi: 10.1371/journal.pone.0003064.


Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces.

Scanlan PD, Marchesi JR.

ISME J. 2008 Dec;2(12):1183-93. doi: 10.1038/ismej.2008.76. Epub 2008 Jul 31.


Comparative analysis of human gut microbiota by barcoded pyrosequencing.

Andersson AF, Lindberg M, Jakobsson H, Bäckhed F, Nyrén P, Engstrand L.

PLoS One. 2008 Jul 30;3(7):e2836. doi: 10.1371/journal.pone.0002836.


Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases.

Peterson DA, Frank DN, Pace NR, Gordon JI.

Cell Host Microbe. 2008 Jun 12;3(6):417-27. doi: 10.1016/j.chom.2008.05.001. Review.


Modulation of the maturing gut barrier and microbiota: a novel target in allergic disease.

Isolauri E, Kalliomäki M, Laitinen K, Salminen S.

Curr Pharm Des. 2008;14(14):1368-75. Review.


Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis.

Scanlan PD, Shanahan F, Marchesi JR.

BMC Microbiol. 2008 May 20;8:79. doi: 10.1186/1471-2180-8-79.


Metagenomic analysis of human diarrhea: viral detection and discovery.

Finkbeiner SR, Allred AF, Tarr PI, Klein EJ, Kirkwood CD, Wang D.

PLoS Pathog. 2008 Feb 29;4(2):e1000011. doi: 10.1371/journal.ppat.1000011.


Gut microbiota modulation with norfloxacin and ampicillin enhances glucose tolerance in mice.

Membrez M, Blancher F, Jaquet M, Bibiloni R, Cani PD, Burcelin RG, Corthesy I, Macé K, Chou CJ.

FASEB J. 2008 Jul;22(7):2416-26. doi: 10.1096/fj.07-102723. Epub 2008 Mar 7.


Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex.

Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R.

Nat Methods. 2008 Mar;5(3):235-7. doi: 10.1038/nmeth.1184. Epub 2008 Feb 10.


Symbiotic gut microbes modulate human metabolic phenotypes.

Li M, Wang B, Zhang M, Rantalainen M, Wang S, Zhou H, Zhang Y, Shen J, Pang X, Zhang M, Wei H, Chen Y, Lu H, Zuo J, Su M, Qiu Y, Jia W, Xiao C, Smith LM, Yang S, Holmes E, Tang H, Zhao G, Nicholson JK, Li L, Zhao L.

Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):2117-22. doi: 10.1073/pnas.0712038105. Epub 2008 Feb 5.


Probiotic modulation of symbiotic gut microbial-host metabolic interactions in a humanized microbiome mouse model.

Martin FP, Wang Y, Sprenger N, Yap IK, Lundstedt T, Lek P, Rezzi S, Ramadan Z, van Bladeren P, Fay LB, Kochhar S, Lindon JC, Holmes E, Nicholson JK.

Mol Syst Biol. 2008;4:157. doi: 10.1038/msb4100190. Epub 2008 Jan 15.


Active Crohn's disease and ulcerative colitis can be specifically diagnosed and monitored based on the biostructure of the fecal flora.

Swidsinski A, Loening-Baucke V, Vaneechoutte M, Doerffel Y.

Inflamm Bowel Dis. 2008 Feb;14(2):147-61.


Gastrointestinal microbiology enters the metagenomics era.

Frank DN, Pace NR.

Curr Opin Gastroenterol. 2008 Jan;24(1):4-10. Review.


The human microbiome project.

Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI.

Nature. 2007 Oct 18;449(7164):804-10.


Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases.

Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, Pace NR.

Proc Natl Acad Sci U S A. 2007 Aug 21;104(34):13780-5. Epub 2007 Aug 15.


Development of the human infant intestinal microbiota.

Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO.

PLoS Biol. 2007 Jul;5(7):e177. Epub 2007 Jun 26.


Mechanisms underlying the resistance to diet-induced obesity in germ-free mice.

Bäckhed F, Manchester JK, Semenkovich CF, Gordon JI.

Proc Natl Acad Sci U S A. 2007 Jan 16;104(3):979-84. Epub 2007 Jan 8.

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