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Items: 18

1.

SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions.

Kim BC, Kim WY, Park D, Chung WH, Shin KS, Bhak J.

BMC Bioinformatics. 2008;9 Suppl 1:S2. doi: 10.1186/1471-2105-9-S1-S2.

2.

F-SNP: computationally predicted functional SNPs for disease association studies.

Lee PH, Shatkay H.

Nucleic Acids Res. 2008 Jan;36(Database issue):D820-4. Epub 2007 Nov 5.

3.

Genomic mutation consequence calculator.

Major JE.

Bioinformatics. 2007 Nov 15;23(22):3091-2. Epub 2007 Jun 28.

PMID:
17599934
4.

Database resources of the National Center for Biotechnology Information.

Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, Geer LY, Kapustin Y, Khovayko O, Landsman D, Lipman DJ, Madden TL, Maglott DR, Ostell J, Miller V, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Sirotkin K, Souvorov A, Starchenko G, Tatusov RL, Tatusova TA, Wagner L, Yaschenko E.

Nucleic Acids Res. 2007 Jan;35(Database issue):D5-12. Epub 2006 Dec 14.

5.

Snap: an integrated SNP annotation platform.

Li S, Ma L, Li H, Vang S, Hu Y, Bolund L, Wang J.

Nucleic Acids Res. 2007 Jan;35(Database issue):D707-10. Epub 2006 Nov 29.

6.

FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization.

Yuan HY, Chiou JJ, Tseng WH, Liu CH, Liu CK, Lin YJ, Wang HH, Yao A, Chen YT, Hsu CN.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W635-41.

7.

Missense meanderings in sequence space: a biophysical view of protein evolution.

DePristo MA, Weinreich DM, Hartl DL.

Nat Rev Genet. 2005 Sep;6(9):678-87. Review.

PMID:
16074985
8.

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

Pruitt KD, Tatusova T, Maglott DR.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.

9.

Systematic identification and analysis of exonic splicing silencers.

Wang Z, Rolish ME, Yeo G, Tung V, Mawson M, Burge CB.

Cell. 2004 Dec 17;119(6):831-45.

10.

Variation in sequence and organization of splicing regulatory elements in vertebrate genes.

Yeo G, Hoon S, Venkatesh B, Burge CB.

Proc Natl Acad Sci U S A. 2004 Nov 2;101(44):15700-5. Epub 2004 Oct 25.

11.

Cell signalling and the control of pre-mRNA splicing.

Shin C, Manley JL.

Nat Rev Mol Cell Biol. 2004 Sep;5(9):727-38. Review.

PMID:
15340380
12.

RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons.

Fairbrother WG, Yeo GW, Yeh R, Goldstein P, Mawson M, Sharp PA, Burge CB.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W187-90.

13.

The Ensembl automatic gene annotation system.

Curwen V, Eyras E, Andrews TD, Clarke L, Mongin E, Searle SM, Clamp M.

Genome Res. 2004 May;14(5):942-50.

14.

SIFT: Predicting amino acid changes that affect protein function.

Ng PC, Henikoff S.

Nucleic Acids Res. 2003 Jul 1;31(13):3812-4.

15.

Human non-synonymous SNPs: server and survey.

Ramensky V, Bork P, Sunyaev S.

Nucleic Acids Res. 2002 Sep 1;30(17):3894-900.

16.

Candidate-gene approaches for studying complex genetic traits: practical considerations.

Tabor HK, Risch NJ, Myers RM.

Nat Rev Genet. 2002 May;3(5):391-7. doi: 10.1038/nrg796. Review.

PMID:
11988764
17.

Listening to silence and understanding nonsense: exonic mutations that affect splicing.

Cartegni L, Chew SL, Krainer AR.

Nat Rev Genet. 2002 Apr;3(4):285-98. Review.

PMID:
11967553
18.

BLAT--the BLAST-like alignment tool.

Kent WJ.

Genome Res. 2002 Apr;12(4):656-64.

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