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Items: 1 to 20 of 46

1.

Diagnostic signatures from microarrays: a bioinformatics concept for personalized medicine.

Spang R.

Drug Discov Today. 2004 Dec 15;9(24 Suppl):S32-6.

PMID:
23573658
2.

Clustering cancer gene expression data: a comparative study.

de Souto MC, Costa IG, de Araujo DS, Ludermir TB, Schliep A.

BMC Bioinformatics. 2008 Nov 27;9:497. doi: 10.1186/1471-2105-9-497.

3.

A comparative study of different machine learning methods on microarray gene expression data.

Pirooznia M, Yang JY, Yang MQ, Deng Y.

BMC Genomics. 2008;9 Suppl 1:S13. doi: 10.1186/1471-2164-9-S1-S13.

4.

Techniques for clustering gene expression data.

Kerr G, Ruskin HJ, Crane M, Doolan P.

Comput Biol Med. 2008 Mar;38(3):283-93. Epub 2007 Dec 3. Review.

PMID:
18061589
5.

Evaluation of clustering algorithms for gene expression data.

Datta S, Datta S.

BMC Bioinformatics. 2006 Dec 12;7 Suppl 4:S17.

6.

Integrative molecular concept modeling of prostate cancer progression.

Tomlins SA, Mehra R, Rhodes DR, Cao X, Wang L, Dhanasekaran SM, Kalyana-Sundaram S, Wei JT, Rubin MA, Pienta KJ, Shah RB, Chinnaiyan AM.

Nat Genet. 2007 Jan;39(1):41-51. Epub 2006 Dec 17.

PMID:
17173048
7.

Metric for measuring the effectiveness of clustering of DNA microarray expression.

Loganantharaj R, Cheepala S, Clifford J.

BMC Bioinformatics. 2006 Sep 6;7 Suppl 2:S5.

8.

NCBI GEO: mining tens of millions of expression profiles--database and tools update.

Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Edgar R.

Nucleic Acids Res. 2007 Jan;35(Database issue):D760-5. Epub 2006 Nov 11.

10.

Serrated carcinomas form a subclass of colorectal cancer with distinct molecular basis.

Laiho P, Kokko A, Vanharanta S, Salovaara R, Sammalkorpi H, Järvinen H, Mecklin JP, Karttunen TJ, Tuppurainen K, Davalos V, Schwartz S Jr, Arango D, Mäkinen MJ, Aaltonen LA.

Oncogene. 2007 Jan 11;26(2):312-20. Epub 2006 Jul 3.

PMID:
16819509
11.

Prognostic gene expression signatures can be measured in tissues collected in RNAlater preservative.

Chowdary D, Lathrop J, Skelton J, Curtin K, Briggs T, Zhang Y, Yu J, Wang Y, Mazumder A.

J Mol Diagn. 2006 Feb;8(1):31-9.

12.

How does gene expression clustering work?

D'haeseleer P.

Nat Biotechnol. 2005 Dec;23(12):1499-501. Review.

PMID:
16333293
13.

Functional network analysis reveals extended gliomagenesis pathway maps and three novel MYC-interacting genes in human gliomas.

Bredel M, Bredel C, Juric D, Harsh GR, Vogel H, Recht LD, Sikic BI.

Cancer Res. 2005 Oct 1;65(19):8679-89.

14.

Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme.

Liang Y, Diehn M, Watson N, Bollen AW, Aldape KD, Nicholas MK, Lamborn KR, Berger MS, Botstein D, Brown PO, Israel MA.

Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5814-9. Epub 2005 Apr 12.

15.

A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis.

Statnikov A, Aliferis CF, Tsamardinos I, Hardin D, Levy S.

Bioinformatics. 2005 Mar 1;21(5):631-43. Epub 2004 Sep 16.

PMID:
15374862
16.

Metagenes and molecular pattern discovery using matrix factorization.

Brunet JP, Tamayo P, Golub TR, Mesirov JP.

Proc Natl Acad Sci U S A. 2004 Mar 23;101(12):4164-9. Epub 2004 Mar 11.

17.

Open source clustering software.

de Hoon MJ, Imoto S, Nolan J, Miyano S.

Bioinformatics. 2004 Jun 12;20(9):1453-4. Epub 2004 Feb 10.

PMID:
14871861
18.

Gene expression-based high-throughput screening(GE-HTS) and application to leukemia differentiation.

Stegmaier K, Ross KN, Colavito SA, O'Malley S, Stockwell BR, Golub TR.

Nat Genet. 2004 Mar;36(3):257-63. Epub 2004 Feb 8. Erratum in: Nat Genet. 2004 Apr;36(4):427. Nat Genet. 2005 Mar;37(3):328.

PMID:
14770183
19.

Gene expression profiling identifies clinically relevant subtypes of prostate cancer.

Lapointe J, Li C, Higgins JP, van de Rijn M, Bair E, Montgomery K, Ferrari M, Egevad L, Rayford W, Bergerheim U, Ekman P, DeMarzo AM, Tibshirani R, Botstein D, Brown PO, Brooks JD, Pollack JR.

Proc Natl Acad Sci U S A. 2004 Jan 20;101(3):811-6. Epub 2004 Jan 7.

20.

Robust singular value decomposition analysis of microarray data.

Liu L, Hawkins DM, Ghosh S, Young SS.

Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13167-72. Epub 2003 Oct 27.

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