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Items: 1 to 20 of 33

1.

Understanding eukaryotic linear motifs and their role in cell signaling and regulation.

Diella F, Haslam N, Chica C, Budd A, Michael S, Brown NP, Trave G, Gibson TJ.

Front Biosci. 2008 May 1;13:6580-603. Review.

PMID:
18508681
2.

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences.

Chica C, Labarga A, Gould CM, López R, Gibson TJ.

BMC Bioinformatics. 2008 May 6;9:229. doi: 10.1186/1471-2105-9-229.

3.

C/EBPs: recipients of extracellular signals through proteome modulation.

Nerlov C.

Curr Opin Cell Biol. 2008 Apr;20(2):180-5. doi: 10.1016/j.ceb.2008.02.002. Epub 2008 Mar 21. Review.

PMID:
18358708
4.

Pfam 10 years on: 10,000 families and still growing.

Sammut SJ, Finn RD, Bateman A.

Brief Bioinform. 2008 May;9(3):210-9. doi: 10.1093/bib/bbn010. Epub 2008 Mar 15. Review.

PMID:
18344544
5.

Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation.

Michael S, Travé G, Ramu C, Chica C, Gibson TJ.

Bioinformatics. 2008 Feb 15;24(4):453-7. doi: 10.1093/bioinformatics/btm624. Epub 2008 Jan 9.

PMID:
18184688
6.

The universal protein resource (UniProt).

UniProt Consortium..

Nucleic Acids Res. 2008 Jan;36(Database issue):D190-5. Epub 2007 Nov 27.

7.

Concepts in sumoylation: a decade on.

Geiss-Friedlander R, Melchior F.

Nat Rev Mol Cell Biol. 2007 Dec;8(12):947-56. Review.

PMID:
18000527
8.

The Gene Ontology project in 2008.

Gene Ontology Consortium..

Nucleic Acids Res. 2008 Jan;36(Database issue):D440-4. Epub 2007 Nov 4.

9.

Gene Ontology annotations at SGD: new data sources and annotation methods.

Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM.

Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. Epub 2007 Nov 3.

10.

The 2R hypothesis: an update.

Kasahara M.

Curr Opin Immunol. 2007 Oct;19(5):547-52. Epub 2007 Aug 17. Review.

PMID:
17707623
11.

Structural mechanisms underlying posttranslational modification by ubiquitin-like proteins.

Dye BT, Schulman BA.

Annu Rev Biophys Biomol Struct. 2007;36:131-50.

PMID:
17477837
12.
13.

Local structural disorder imparts plasticity on linear motifs.

Fuxreiter M, Tompa P, Simon I.

Bioinformatics. 2007 Apr 15;23(8):950-6. Epub 2007 Mar 25.

PMID:
17387114
14.

An acetylation/deacetylation-SUMOylation switch through a phylogenetically conserved psiKXEP motif in the tumor suppressor HIC1 regulates transcriptional repression activity.

Stankovic-Valentin N, Deltour S, Seeler J, Pinte S, Vergoten G, Guérardel C, Dejean A, Leprince D.

Mol Cell Biol. 2007 Apr;27(7):2661-75. Epub 2007 Feb 5.

15.

Ensembl 2007.

Hubbard TJ, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Fitzgerald S, Fernandez-Banet J, Graf S, Haider S, Hammond M, Herrero J, Holland R, Howe K, Howe K, Johnson N, Kahari A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Melsopp C, Megy K, Meidl P, Ouverdin B, Parker A, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Severin J, Slater G, Smedley D, Spudich G, Trevanion S, Vilella A, Vogel J, White S, Wood M, Cox T, Curwen V, Durbin R, Fernandez-Suarez XM, Flicek P, Kasprzyk A, Proctor G, Searle S, Smith J, Ureta-Vidal A, Birney E.

Nucleic Acids Res. 2007 Jan;35(Database issue):D610-7. Epub 2006 Dec 5.

16.

An extended consensus motif enhances the specificity of substrate modification by SUMO.

Yang SH, Galanis A, Witty J, Sharrocks AD.

EMBO J. 2006 Nov 1;25(21):5083-93. Epub 2006 Oct 12.

17.

SMART 5: domains in the context of genomes and networks.

Letunic I, Copley RR, Pils B, Pinkert S, Schultz J, Bork P.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D257-60.

18.

PDSM, a motif for phosphorylation-dependent SUMO modification.

Hietakangas V, Anckar J, Blomster HA, Fujimoto M, Palvimo JJ, Nakai A, Sistonen L.

Proc Natl Acad Sci U S A. 2006 Jan 3;103(1):45-50. Epub 2005 Dec 21.

19.

The EH1 motif in metazoan transcription factors.

Copley RR.

BMC Genomics. 2005 Nov 27;6:169.

20.

From 2R to 3R: evidence for a fish-specific genome duplication (FSGD).

Meyer A, Van de Peer Y.

Bioessays. 2005 Sep;27(9):937-45. Review.

PMID:
16108068

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