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Items: 1 to 20 of 69

1.

What is principal component analysis?

Ringnér M.

Nat Biotechnol. 2008 Mar;26(3):303-4. doi: 10.1038/nbt0308-303. No abstract available.

PMID:
18327243
2.

The evolution of combinatorial gene regulation in fungi.

Tuch BB, Galgoczy DJ, Hernday AD, Li H, Johnson AD.

PLoS Biol. 2008 Feb;6(2):e38. doi: 10.1371/journal.pbio.0060038.

3.

On the relation between promoter divergence and gene expression evolution.

Tirosh I, Weinberger A, Bezalel D, Kaganovich M, Barkai N.

Mol Syst Biol. 2008;4:159. doi: 10.1038/msb4100198. Epub 2008 Jan 15.

4.

Responses of pathogenic and nonpathogenic yeast species to steroids reveal the functioning and evolution of multidrug resistance transcriptional networks.

Banerjee D, Lelandais G, Shukla S, Mukhopadhyay G, Jacq C, Devaux F, Prasad R.

Eukaryot Cell. 2008 Jan;7(1):68-77. Epub 2007 Nov 9.

5.

Divergence of transcription factor binding sites across related yeast species.

Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, Seringhaus MR, Wang LY, Gerstein M, Snyder M.

Science. 2007 Aug 10;317(5839):815-9.

6.

Combined analysis reveals a core set of cycling genes.

Lu Y, Mahony S, Benos PV, Rosenfeld R, Simon I, Breeden LL, Bar-Joseph Z.

Genome Biol. 2007;8(7):R146.

7.

Metagene projection for cross-platform, cross-species characterization of global transcriptional states.

Tamayo P, Scanfeld D, Ebert BL, Gillette MA, Roberts CW, Mesirov JP.

Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):5959-64. Epub 2007 Mar 27.

8.
9.

Mitochondria-associated yeast mRNAs and the biogenesis of molecular complexes.

Garcia M, Darzacq X, Delaveau T, Jourdren L, Singer RH, Jacq C.

Mol Biol Cell. 2007 Feb;18(2):362-8. Epub 2006 Nov 15.

10.

NCBI GEO: mining tens of millions of expression profiles--database and tools update.

Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Edgar R.

Nucleic Acids Res. 2007 Jan;35(Database issue):D760-5. Epub 2006 Nov 11.

11.
13.

Evolution of alternative transcriptional circuits with identical logic.

Tsong AE, Tuch BB, Li H, Johnson AD.

Nature. 2006 Sep 28;443(7110):415-20.

PMID:
17006507
14.

Co-evolution of transcriptional and post-translational cell-cycle regulation.

Jensen LJ, Jensen TS, de Lichtenberg U, Brunak S, Bork P.

Nature. 2006 Oct 5;443(7111):594-7. Epub 2006 Sep 27.

PMID:
17006448
15.

Conservation of expression and sequence of metabolic genes is reflected by activity across metabolic states.

Bilu Y, Shlomi T, Barkai N, Ruppin E.

PLoS Comput Biol. 2006 Aug 18;2(8):e106. Epub 2006 Jul 6.

16.

Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

Foat BC, Morozov AV, Bussemaker HJ.

Bioinformatics. 2006 Jul 15;22(14):e141-9.

PMID:
16873464
17.

Pdr1 regulates multidrug resistance in Candida glabrata: gene disruption and genome-wide expression studies.

Vermitsky JP, Earhart KD, Smith WL, Homayouni R, Edlind TD, Rogers PD.

Mol Microbiol. 2006 Aug;61(3):704-22. Epub 2006 Jun 27.

18.

A genetic signature of interspecies variations in gene expression.

Tirosh I, Weinberger A, Carmi M, Barkai N.

Nat Genet. 2006 Jul;38(7):830-4. Epub 2006 Jun 18.

PMID:
16783381
19.

Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution.

Dujon B.

Trends Genet. 2006 Jul;22(7):375-87. Epub 2006 May 30. Review.

PMID:
16730849
20.

Evolution of transcriptional regulatory networks in microbial genomes.

Gelfand MS.

Curr Opin Struct Biol. 2006 Jun;16(3):420-9. Epub 2006 May 2. Review.

PMID:
16650982

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