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Items: 1 to 20 of 49

1.

A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart.

Kalsotra A, Xiao X, Ward AJ, Castle JC, Johnson JM, Burge CB, Cooper TA.

Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20333-8. doi: 10.1073/pnas.0809045105. Epub 2008 Dec 15.

2.

Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2.

Zhang C, Zhang Z, Castle J, Sun S, Johnson J, Krainer AR, Zhang MQ.

Genes Dev. 2008 Sep 15;22(18):2550-63. doi: 10.1101/gad.1703108. Erratum in: Genes Dev. 2008 Oct 15;22(20):2902.

3.

ALEXA: a microarray design platform for alternative expression analysis.

Griffith M, Tang MJ, Griffith OL, Morin RD, Chan SY, Asano JK, Zeng T, Flibotte S, Ally A, Baross A, Hirst M, Jones SJ, Morin GB, Tai IT, Marra MA.

Nat Methods. 2008 Feb;5(2):118. doi: 10.1038/nmeth0208-118. No abstract available.

PMID:
18235430
4.

Phase I trial with the CD44v6-targeting immunoconjugate bivatuzumab mertansine in head and neck squamous cell carcinoma.

Riechelmann H, Sauter A, Golze W, Hanft G, Schroen C, Hoermann K, Erhardt T, Gronau S.

Oral Oncol. 2008 Sep;44(9):823-9. doi: 10.1016/j.oraloncology.2007.10.009. Epub 2008 Jan 18.

PMID:
18203652
5.

Genome-wide analysis of transcript isoform variation in humans.

Kwan T, Benovoy D, Dias C, Gurd S, Provencher C, Beaulieu P, Hudson TJ, Sladek R, Majewski J.

Nat Genet. 2008 Feb;40(2):225-31. doi: 10.1038/ng.2007.57. Epub 2008 Jan 13.

PMID:
18193047
6.

Database resources of the National Center for Biotechnology Information.

Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Edgar R, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Khovayko O, Landsman D, Lipman DJ, Madden TL, Maglott DR, Miller V, Ostell J, Pruitt KD, Schuler GD, Shumway M, Sequeira E, Sherry ST, Sirotkin K, Souvorov A, Starchenko G, Tatusov RL, Tatusova TA, Wagner L, Yaschenko E.

Nucleic Acids Res. 2008 Jan;36(Database issue):D13-21. Epub 2007 Nov 27.

7.

Alternative splicing events identified in human embryonic stem cells and neural progenitors.

Yeo GW, Xu X, Liang TY, Muotri AR, Carson CT, Coufal NG, Gage FH.

PLoS Comput Biol. 2007 Oct;3(10):1951-67. Epub 2007 Aug 24.

8.

The Fox-1 family and SUP-12 coordinately regulate tissue-specific alternative splicing in vivo.

Kuroyanagi H, Ohno G, Mitani S, Hagiwara M.

Mol Cell Biol. 2007 Dec;27(24):8612-21. Epub 2007 Oct 8.

9.

A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing.

Das D, Clark TA, Schweitzer A, Yamamoto M, Marr H, Arribere J, Minovitsky S, Poliakov A, Dubchak I, Blume JE, Conboy JG.

Nucleic Acids Res. 2007;35(14):4845-57. Epub 2007 Jul 10.

10.

Functional coordination of alternative splicing in the mammalian central nervous system.

Fagnani M, Barash Y, Ip JY, Misquitta C, Pan Q, Saltzman AL, Shai O, Lee L, Rozenhek A, Mohammad N, Willaime-Morawek S, Babak T, Zhang W, Hughes TR, van der Kooy D, Frey BJ, Blencowe BJ.

Genome Biol. 2007;8(6):R108.

11.

Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements.

Yeo GW, Van Nostrand EL, Liang TY.

PLoS Genet. 2007 May 25;3(5):e85. Epub 2007 Apr 13. Erratum in: PLoS Genet. 2007 Jul;3(7):e122. Nostrand, Eric L Van [corrected to Van Nostrand, Eric L].

13.

Discovery of tissue-specific exons using comprehensive human exon microarrays.

Clark TA, Schweitzer AC, Chen TX, Staples MK, Lu G, Wang H, Williams A, Blume JE.

Genome Biol. 2007;8(4):R64.

14.

Safety and pharmacokinetics of bivatuzumab mertansine in patients with CD44v6-positive metastatic breast cancer: final results of a phase I study.

Rupp U, Schoendorf-Holland E, Eichbaum M, Schuetz F, Lauschner I, Schmidt P, Staab A, Hanft G, Huober J, Sinn HP, Sohn C, Schneeweiss A.

Anticancer Drugs. 2007 Apr;18(4):477-85.

PMID:
17351401
15.

An RNA map predicting Nova-dependent splicing regulation.

Ule J, Stefani G, Mele A, Ruggiu M, Wang X, Taneri B, Gaasterland T, Blencowe BJ, Darnell RB.

Nature. 2006 Nov 30;444(7119):580-6. Epub 2006 Oct 25.

PMID:
17065982
16.

Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers.

Goren A, Ram O, Amit M, Keren H, Lev-Maor G, Vig I, Pupko T, Ast G.

Mol Cell. 2006 Jun 23;22(6):769-81.

17.

Rosetta error model for gene expression analysis.

Weng L, Dai H, Zhan Y, He Y, Stepaniants SB, Bassett DE.

Bioinformatics. 2006 May 1;22(9):1111-21. Epub 2006 Mar 7.

PMID:
16522673
18.

Unusual intron conservation near tissue-regulated exons found by splicing microarrays.

Sugnet CW, Srinivasan K, Clark TA, O'Brien G, Cline MS, Wang H, Williams A, Kulp D, Blume JE, Haussler D, Ares M Jr.

PLoS Comput Biol. 2006 Jan;2(1):e4. Epub 2006 Jan 20.

19.

Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing.

Martinez-Contreras R, Fisette JF, Nasim FU, Madden R, Cordeau M, Chabot B.

PLoS Biol. 2006 Feb;4(2):e21. Epub 2006 Jan 10.

20.

Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals.

Underwood JG, Boutz PL, Dougherty JD, Stoilov P, Black DL.

Mol Cell Biol. 2005 Nov;25(22):10005-16.

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