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Items: 1 to 20 of 100

1.

Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy.

Schermelleh L, Carlton PM, Haase S, Shao L, Winoto L, Kner P, Burke B, Cardoso MC, Agard DA, Gustafsson MG, Leonhardt H, Sedat JW.

Science. 2008 Jun 6;320(5881):1332-6. doi: 10.1126/science.1156947.

2.

Similar active genes cluster in specialized transcription factories.

Xu M, Cook PR.

J Cell Biol. 2008 May 19;181(4):615-23. doi: 10.1083/jcb.200710053.

3.

Gene regulation in the third dimension.

Dekker J.

Science. 2008 Mar 28;319(5871):1793-4. doi: 10.1126/science.1152850.

4.

A mechanism for Ikaros regulation of human globin gene switching.

Keys JR, Tallack MR, Zhan Y, Papathanasiou P, Goodnow CC, Gaensler KM, Crossley M, Dekker J, Perkins AC.

Br J Haematol. 2008 May;141(3):398-406. doi: 10.1111/j.1365-2141.2008.07065.x. Epub 2008 Mar 3.

PMID:
18318763
5.

Exchange of GATA factors mediates transitions in looped chromatin organization at a developmentally regulated gene locus.

Jing H, Vakoc CR, Ying L, Mandat S, Wang H, Zheng X, Blobel GA.

Mol Cell. 2008 Feb 1;29(2):232-42. doi: 10.1016/j.molcel.2007.11.020.

6.
7.

Actin-dependent intranuclear repositioning of an active gene locus in vivo.

Dundr M, Ospina JK, Sung MH, John S, Upender M, Ried T, Hager GL, Matera AG.

J Cell Biol. 2007 Dec 17;179(6):1095-103. Epub 2007 Dec 10.

8.

Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic.

Augui S, Filion GJ, Huart S, Nora E, Guggiari M, Maresca M, Stewart AF, Heard E.

Science. 2007 Dec 7;318(5856):1632-6.

9.

Gene regulation through nuclear organization.

Sexton T, Schober H, Fraser P, Gasser SM.

Nat Struct Mol Biol. 2007 Nov;14(11):1049-55. Epub 2007 Nov 5.

PMID:
17984967
10.

An evaluation of 3C-based methods to capture DNA interactions.

Simonis M, Kooren J, de Laat W.

Nat Methods. 2007 Nov;4(11):895-901. Review.

PMID:
17971780
11.

Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein.

Xu N, Donohoe ME, Silva SS, Lee JT.

Nat Genet. 2007 Nov;39(11):1390-6. Epub 2007 Oct 21.

PMID:
17952071
12.

We gather together: insulators and genome organization.

Wallace JA, Felsenfeld G.

Curr Opin Genet Dev. 2007 Oct;17(5):400-7. Epub 2007 Oct 24. Review.

13.

Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex.

Lanzuolo C, Roure V, Dekker J, Bantignies F, Orlando V.

Nat Cell Biol. 2007 Oct;9(10):1167-74. Epub 2007 Sep 9.

PMID:
17828248
14.

Local and cis effects of the H element on expression of odorant receptor genes in mouse.

Fuss SH, Omura M, Mombaerts P.

Cell. 2007 Jul 27;130(2):373-84.

15.

Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

Hagège H, Klous P, Braem C, Splinter E, Dekker J, Cathala G, de Laat W, Forné T.

Nat Protoc. 2007;2(7):1722-33.

PMID:
17641637
16.

Myc dynamically and preferentially relocates to a transcription factory occupied by Igh.

Osborne CS, Chakalova L, Mitchell JA, Horton A, Wood AL, Bolland DJ, Corcoran AE, Fraser P.

PLoS Biol. 2007 Aug;5(8):e192.

18.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foissac S, Alioto T, Brent M, Pachter L, Tress ML, Valencia A, Choo SW, Choo CY, Ucla C, Manzano C, Wyss C, Cheung E, Clark TG, Brown JB, Ganesh M, Patel S, Tammana H, Chrast J, Henrichsen CN, Kai C, Kawai J, Nagalakshmi U, Wu J, Lian Z, Lian J, Newburger P, Zhang X, Bickel P, Mattick JS, Carninci P, Hayashizaki Y, Weissman S, Hubbard T, Myers RM, Rogers J, Stadler PF, Lowe TM, Wei CL, Ruan Y, Struhl K, Gerstein M, Antonarakis SE, Fu Y, Green ED, Karaöz U, Siepel A, Taylor J, Liefer LA, Wetterstrand KA, Good PJ, Feingold EA, Guyer MS, Cooper GM, Asimenos G, Dewey CN, Hou M, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Huang H, Zhang NR, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Seringhaus M, Church D, Rosenbloom K, Kent WJ, Stone EA; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute, Batzoglou S, Goldman N, Hardison RC, Haussler D, Miller W, Sidow A, Trinklein ND, Zhang ZD, Barrera L, Stuart R, King DC, Ameur A, Enroth S, Bieda MC, Kim J, Bhinge AA, Jiang N, Liu J, Yao F, Vega VB, Lee CW, Ng P, Shahab A, Yang A, Moqtaderi Z, Zhu Z, Xu X, Squazzo S, Oberley MJ, Inman D, Singer MA, Richmond TA, Munn KJ, Rada-Iglesias A, Wallerman O, Komorowski J, Fowler JC, Couttet P, Bruce AW, Dovey OM, Ellis PD, Langford CF, Nix DA, Euskirchen G, Hartman S, Urban AE, Kraus P, Van Calcar S, Heintzman N, Kim TH, Wang K, Qu C, Hon G, Luna R, Glass CK, Rosenfeld MG, Aldred SF, Cooper SJ, Halees A, Lin JM, Shulha HP, Zhang X, Xu M, Haidar JN, Yu Y, Ruan Y, Iyer VR, Green RD, Wadelius C, Farnham PJ, Ren B, Harte RA, Hinrichs AS, Trumbower H, Clawson H, Hillman-Jackson J, Zweig AS, Smith K, Thakkapallayil A, Barber G, Kuhn RM, Karolchik D, Armengol L, Bird CP, de Bakker PI, Kern AD, Lopez-Bigas N, Martin JD, Stranger BE, Woodroffe A, Davydov E, Dimas A, Eyras E, Hallgrímsdóttir IB, Huppert J, Zody MC, Abecasis GR, Estivill X, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Koriabine M, Nefedov M, Osoegawa K, Yoshinaga Y, Zhu B, de Jong PJ.

Nature. 2007 Jun 14;447(7146):799-816.

19.

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions.

Zhang ZD, Paccanaro A, Fu Y, Weissman S, Weng Z, Chang J, Snyder M, Gerstein MB.

Genome Res. 2007 Jun;17(6):787-97.

20.

The landscape of histone modifications across 1% of the human genome in five human cell lines.

Koch CM, Andrews RM, Flicek P, Dillon SC, Karaöz U, Clelland GK, Wilcox S, Beare DM, Fowler JC, Couttet P, James KD, Lefebvre GC, Bruce AW, Dovey OM, Ellis PD, Dhami P, Langford CF, Weng Z, Birney E, Carter NP, Vetrie D, Dunham I.

Genome Res. 2007 Jun;17(6):691-707.

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