Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 56

1.
2.

A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation.

Lin YY, Qi Y, Lu JY, Pan X, Yuan DS, Zhao Y, Bader JS, Boeke JD.

Genes Dev. 2008 Aug 1;22(15):2062-74. doi: 10.1101/gad.1679508.

3.

From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions.

Ulitsky I, Shlomi T, Kupiec M, Shamir R.

Mol Syst Biol. 2008;4:209. doi: 10.1038/msb.2008.42. Epub 2008 Jul 15.

4.

Functional maps of protein complexes from quantitative genetic interaction data.

Bandyopadhyay S, Kelley R, Krogan NJ, Ideker T.

PLoS Comput Biol. 2008 Apr 18;4(4):e1000065. doi: 10.1371/journal.pcbi.1000065.

5.

Predicting co-complexed protein pairs from heterogeneous data.

Qiu J, Noble WS.

PLoS Comput Biol. 2008 Apr 18;4(4):e1000054. doi: 10.1371/journal.pcbi.1000054.

6.
7.

Defining functional distance using manifold embeddings of gene ontology annotations.

Lerman G, Shakhnovich BE.

Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11334-9. Epub 2007 Jun 26.

8.
9.

Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map.

Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, Andrews B, Boone C, Berger SL, Hieter P, Zhang Z, Brown GW, Ingles CJ, Emili A, Allis CD, Toczyski DP, Weissman JS, Greenblatt JF, Krogan NJ.

Nature. 2007 Apr 12;446(7137):806-10. Epub 2007 Feb 21.

PMID:
17314980
10.

A systems biology analysis of the Drosophila phagosome.

Stuart LM, Boulais J, Charriere GM, Hennessy EJ, Brunet S, Jutras I, Goyette G, Rondeau C, Letarte S, Huang H, Ye P, Morales F, Kocks C, Bader JS, Desjardins M, Ezekowitz RA.

Nature. 2007 Jan 4;445(7123):95-101. Epub 2006 Dec 6.

PMID:
17151602
11.

STRING 7--recent developments in the integration and prediction of protein interactions.

von Mering C, Jensen LJ, Kuhn M, Chaffron S, Doerks T, Krüger B, Snel B, Bork P.

Nucleic Acids Res. 2007 Jan;35(Database issue):D358-62. Epub 2006 Nov 10.

12.

Towards the identification of essential genes using targeted genome sequencing and comparative analysis.

Gustafson AM, Snitkin ES, Parker SC, DeLisi C, Kasif S.

BMC Genomics. 2006 Oct 19;7:265.

13.

Genome-wide patterns of histone modifications in yeast.

Millar CB, Grunstein M.

Nat Rev Mol Cell Biol. 2006 Sep;7(9):657-66. Epub 2006 Aug 16. Review.

PMID:
16912715
14.

Gene function prediction from congruent synthetic lethal interactions in yeast.

Ye P, Peyser BD, Pan X, Boeke JD, Spencer FA, Bader JS.

Mol Syst Biol. 2005;1:2005.0026. Epub 2005 Nov 22.

15.

Protein ranking by semi-supervised network propagation.

Weston J, Kuang R, Leslie C, Noble WS.

BMC Bioinformatics. 2006 Mar 20;7 Suppl 1:S10.

16.

Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions.

Chua HN, Sung WK, Wong L.

Bioinformatics. 2006 Jul 1;22(13):1623-30. Epub 2006 Apr 21. Erratum in: Bioinformatics. 2008 Feb 1;24(3):452.

PMID:
16632496
17.

Diffusion kernel-based logistic regression models for protein function prediction.

Lee H, Tu Z, Deng M, Sun F, Chen T.

OMICS. 2006 Spring;10(1):40-55.

PMID:
16584317
18.

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.

Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF.

Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.

PMID:
16554755
19.

A DNA integrity network in the yeast Saccharomyces cerevisiae.

Pan X, Ye P, Yuan DS, Wang X, Bader JS, Boeke JD.

Cell. 2006 Mar 10;124(5):1069-81. Epub 2006 Feb 16. Erratum in: Cell. 2013 May 23;153(5):1165.

20.

Proteome survey reveals modularity of the yeast cell machinery.

Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dümpelfeld B, Edelmann A, Heurtier MA, Hoffman V, Hoefert C, Klein K, Hudak M, Michon AM, Schelder M, Schirle M, Remor M, Rudi T, Hooper S, Bauer A, Bouwmeester T, Casari G, Drewes G, Neubauer G, Rick JM, Kuster B, Bork P, Russell RB, Superti-Furga G.

Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.

PMID:
16429126

Supplemental Content

Support Center