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Items: 7

1.

T1DBase: integration and presentation of complex data for type 1 diabetes research.

Hulbert EM, Smink LJ, Adlem EC, Allen JE, Burdick DB, Burren OS, Cassen VM, Cavnor CC, Dolman GE, Flamez D, Friery KF, Healy BC, Killcoyne SA, Kutlu B, Schuilenburg H, Walker NM, Mychaleckyj J, Eizirik DL, Wicker LS, Todd JA, Goodman N.

Nucleic Acids Res. 2007 Jan;35(Database issue):D742-6. Epub 2006 Dec 14. Erratum in: Nucleic Acids Res. 2007;35(18):6338. Cassen, Victor M [added].

2.

GeneSpeed: protein domain organization of the transcriptome.

Kutchma A, Quayum N, Jensen J.

Nucleic Acids Res. 2007 Jan;35(Database issue):D674-9. Epub 2006 Nov 28.

3.

NCBI GEO: mining tens of millions of expression profiles--database and tools update.

Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Edgar R.

Nucleic Acids Res. 2007 Jan;35(Database issue):D760-5. Epub 2006 Nov 11.

4.

EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes.

Mazzarelli JM, Brestelli J, Gorski RK, Liu J, Manduchi E, Pinney DF, Schug J, White P, Kaestner KH, Stoeckert CJ Jr.

Nucleic Acids Res. 2007 Jan;35(Database issue):D751-5. Epub 2006 Oct 27.

5.

Bioconductor: an open source framework for bioinformatics and computational biology.

Reimers M, Carey VJ.

Methods Enzymol. 2006;411:119-34. Review.

PMID:
16939789
6.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

7.

Promoter features related to tissue specificity as measured by Shannon entropy.

Schug J, Schuller WP, Kappen C, Salbaum JM, Bucan M, Stoeckert CJ Jr.

Genome Biol. 2005;6(4):R33. Epub 2005 Mar 29.

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