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Items: 1 to 20 of 42


The origin of protein interactions and allostery in colocalization.

Kuriyan J, Eisenberg D.

Nature. 2007 Dec 13;450(7172):983-90. Review.


Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps.

Huang H, Jedynak BM, Bader JS.

PLoS Comput Biol. 2007 Nov;3(11):e214. Epub 2007 Sep 21.


Robust protein protein interactions in crowded cellular environments.

Deeds EJ, Ashenberg O, Gerardin J, Shakhnovich EI.

Proc Natl Acad Sci U S A. 2007 Sep 18;104(38):14952-7. Epub 2007 Sep 11.


Propagation of large concentration changes in reversible protein-binding networks.

Maslov S, Ispolatov I.

Proc Natl Acad Sci U S A. 2007 Aug 21;104(34):13655-60. Epub 2007 Aug 15.


Different packing of external residues can explain differences in the thermostability of proteins from thermophilic and mesophilic organisms.

Glyakina AV, Garbuzynskiy SO, Lobanov MY, Galzitskaya OV.

Bioinformatics. 2007 Sep 1;23(17):2231-8. Epub 2007 Jun 28.


The size of the nucleus increases as yeast cells grow.

Jorgensen P, Edgington NP, Schneider BL, Rupes I, Tyers M, Futcher B.

Mol Biol Cell. 2007 Sep;18(9):3523-32. Epub 2007 Jun 27.


Relating three-dimensional structures to protein networks provides evolutionary insights.

Kim PM, Lu LJ, Xia Y, Gerstein MB.

Science. 2006 Dec 22;314(5807):1938-41. Erratum in: Science. 2007 Jan 12;315(5809):187. Science. 2013 Feb 15;339(6121):757.


Structural similarity enhances interaction propensity of proteins.

Lukatsky DB, Shakhnovich BE, Mintseris J, Shakhnovich EI.

J Mol Biol. 2007 Feb 2;365(5):1596-606. Epub 2006 Nov 10.


Quantification of protein half-lives in the budding yeast proteome.

Belle A, Tanay A, Bitincka L, Shamir R, O'Shea EK.

Proc Natl Acad Sci U S A. 2006 Aug 29;103(35):13004-9. Epub 2006 Aug 17.


Free-energy distribution of binary protein-protein binding suggests cross-species interactome differences.

Shi YY, Miller GA, Qian H, Bomsztyk K.

Proc Natl Acad Sci U S A. 2006 Aug 1;103(31):11527-32. Epub 2006 Jul 21.


Structural systems biology: modelling protein interactions.

Aloy P, Russell RB.

Nat Rev Mol Cell Biol. 2006 Mar;7(3):188-97. Review.


Proteome survey reveals modularity of the yeast cell machinery.

Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dümpelfeld B, Edelmann A, Heurtier MA, Hoffman V, Hoefert C, Klein K, Hudak M, Michon AM, Schelder M, Schirle M, Remor M, Rudi T, Hooper S, Bauer A, Bouwmeester T, Casari G, Drewes G, Neubauer G, Rick JM, Kuster B, Bork P, Russell RB, Superti-Furga G.

Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.


A simple physical model for scaling in protein-protein interaction networks.

Deeds EJ, Ashenberg O, Shakhnovich EI.

Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):311-6. Epub 2005 Dec 29.


PINT: Protein-protein Interactions Thermodynamic Database.

Kumar MD, Gromiha MM.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D195-8.


Towards a proteome-scale map of the human protein-protein interaction network.

Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M.

Nature. 2005 Oct 20;437(7062):1173-8. Epub 2005 Sep 28.


A human protein-protein interaction network: a resource for annotating the proteome.

Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE.

Cell. 2005 Sep 23;122(6):957-68.


A dissection of specific and non-specific protein-protein interfaces.

Bahadur RP, Chakrabarti P, Rodier F, Janin J.

J Mol Biol. 2004 Feb 27;336(4):943-55.


Structure-based assembly of protein complexes in yeast.

Aloy P, Böttcher B, Ceulemans H, Leutwein C, Mellwig C, Fischer S, Gavin AC, Bork P, Superti-Furga G, Serrano L, Russell RB.

Science. 2004 Mar 26;303(5666):2026-9.

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