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Items: 1 to 20 of 97

1.

Evolutionary patterns in the sequence and structure of transfer RNA: early origins of archaea and viruses.

Sun FJ, Caetano-Anollés G.

PLoS Comput Biol. 2008 Mar 7;4(3):e1000018. doi: 10.1371/journal.pcbi.1000018.

2.

On the origin of the genetic code: signatures of its primordial complementarity in tRNAs and aminoacyl-tRNA synthetases.

Rodin SN, Rodin AS.

Heredity (Edinb). 2008 Apr;100(4):341-55. doi: 10.1038/sj.hdy.6801086. Epub 2008 Mar 5.

3.

On the evolution of the tRNA-dependent amidotransferases, GatCAB and GatDE.

Sheppard K, Söll D.

J Mol Biol. 2008 Mar 28;377(3):831-44. doi: 10.1016/j.jmb.2008.01.016. Epub 2008 Jan 16.

4.

Characterization and evolutionary history of an archaeal kinase involved in selenocysteinyl-tRNA formation.

Sherrer RL, O'Donoghue P, Söll D.

Nucleic Acids Res. 2008 Mar;36(4):1247-59. doi: 10.1093/nar/gkm1134. Epub 2008 Jan 3.

5.

Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation.

Araiso Y, Palioura S, Ishitani R, Sherrer RL, O'Donoghue P, Yuan J, Oshikane H, Domae N, Defranco J, Söll D, Nureki O.

Nucleic Acids Res. 2008 Mar;36(4):1187-99. Epub 2007 Dec 23.

6.

The origin and evolution of tRNA inferred from phylogenetic analysis of structure.

Sun FJ, Caetano-Anollés G.

J Mol Evol. 2008 Jan;66(1):21-35. Epub 2007 Dec 4.

PMID:
18058157
7.

Robustness and evolvability: a paradox resolved.

Wagner A.

Proc Biol Sci. 2008 Jan 7;275(1630):91-100.

8.

Signature of a primitive genetic code in ancient protein lineages.

Fournier GP, Gogarten JP.

J Mol Evol. 2007 Oct;65(4):425-36. Epub 2007 Oct 6.

PMID:
17922074
9.

Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world.

Wang M, Yafremava LS, Caetano-Anollés D, Mittenthal JE, Caetano-Anollés G.

Genome Res. 2007 Nov;17(11):1572-85. Epub 2007 Oct 1.

10.

Calculation of folding energies of single-stranded nucleic acid sequences: conceptual issues.

Forsdyke DR.

J Theor Biol. 2007 Oct 21;248(4):745-53. Epub 2007 Jul 18. Review.

PMID:
17698086
12.

Biosynthesis of selenocysteine on its tRNA in eukaryotes.

Xu XM, Carlson BA, Mix H, Zhang Y, Saira K, Glass RS, Berry MJ, Gladyshev VN, Hatfield DL.

PLoS Biol. 2007 Jan;5(1):e4.

13.

Natural expansion of the genetic code.

Ambrogelly A, Palioura S, Söll D.

Nat Chem Biol. 2007 Jan;3(1):29-35. Review.

PMID:
17173027
14.

RNA-dependent conversion of phosphoserine forms selenocysteine in eukaryotes and archaea.

Yuan J, Palioura S, Salazar JC, Su D, O'Donoghue P, Hohn MJ, Cardoso AM, Whitman WB, Söll D.

Proc Natl Acad Sci U S A. 2006 Dec 12;103(50):18923-7. Epub 2006 Dec 1.

15.

Common evolutionary trends for SINE RNA structures.

Sun FJ, Fleurdépine S, Bousquet-Antonelli C, Caetano-Anollés G, Deragon JM.

Trends Genet. 2007 Jan;23(1):26-33. Epub 2006 Nov 28.

PMID:
17126948
16.

Emergence of the universal genetic code imprinted in an RNA record.

Hohn MJ, Park HS, O'Donoghue P, Schnitzbauer M, Söll D.

Proc Natl Acad Sci U S A. 2006 Nov 28;103(48):18095-100. Epub 2006 Nov 16.

18.

MANET: tracing evolution of protein architecture in metabolic networks.

Kim HS, Mittenthal JE, Caetano-Anollés G.

BMC Bioinformatics. 2006 Jul 19;7:351.

20.

Compact and ordered collapse of randomly generated RNA sequences.

Schultes EA, Spasic A, Mohanty U, Bartel DP.

Nat Struct Mol Biol. 2005 Dec;12(12):1130-6. Epub 2005 Nov 6.

PMID:
16273104

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