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Items: 1 to 20 of 71

1.

Genome-wide expression profiles of endogenous retroviruses in lymphoid tissues and their biological properties.

Lee YK, Chew A, Phan H, Greenhalgh DG, Cho K.

Virology. 2008 Apr 10;373(2):263-73. doi: 10.1016/j.virol.2007.10.043.

2.

Variable transcriptional activity of endogenous retroviruses in human breast cancer.

Frank O, Verbeke C, Schwarz N, Mayer J, Fabarius A, Hehlmann R, Leib-Mösch C, Seifarth W.

J Virol. 2008 Feb;82(4):1808-18.

3.

Widely variable endogenous retroviral methylation levels in human placenta.

Reiss D, Zhang Y, Mager DL.

Nucleic Acids Res. 2007;35(14):4743-54.

4.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

ENCODE Project Consortium., Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foissac S, Alioto T, Brent M, Pachter L, Tress ML, Valencia A, Choo SW, Choo CY, Ucla C, Manzano C, Wyss C, Cheung E, Clark TG, Brown JB, Ganesh M, Patel S, Tammana H, Chrast J, Henrichsen CN, Kai C, Kawai J, Nagalakshmi U, Wu J, Lian Z, Lian J, Newburger P, Zhang X, Bickel P, Mattick JS, Carninci P, Hayashizaki Y, Weissman S, Hubbard T, Myers RM, Rogers J, Stadler PF, Lowe TM, Wei CL, Ruan Y, Struhl K, Gerstein M, Antonarakis SE, Fu Y, Green ED, Karaöz U, Siepel A, Taylor J, Liefer LA, Wetterstrand KA, Good PJ, Feingold EA, Guyer MS, Cooper GM, Asimenos G, Dewey CN, Hou M, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Huang H, Zhang NR, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Seringhaus M, Church D, Rosenbloom K, Kent WJ, Stone EA; NISC Comparative Sequencing Program.; Baylor College of Medicine Human Genome Sequencing Center.; Washington University Genome Sequencing Center.; Broad Institute.; Children's Hospital Oakland Research Institute., Batzoglou S, Goldman N, Hardison RC, Haussler D, Miller W, Sidow A, Trinklein ND, Zhang ZD, Barrera L, Stuart R, King DC, Ameur A, Enroth S, Bieda MC, Kim J, Bhinge AA, Jiang N, Liu J, Yao F, Vega VB, Lee CW, Ng P, Shahab A, Yang A, Moqtaderi Z, Zhu Z, Xu X, Squazzo S, Oberley MJ, Inman D, Singer MA, Richmond TA, Munn KJ, Rada-Iglesias A, Wallerman O, Komorowski J, Fowler JC, Couttet P, Bruce AW, Dovey OM, Ellis PD, Langford CF, Nix DA, Euskirchen G, Hartman S, Urban AE, Kraus P, Van Calcar S, Heintzman N, Kim TH, Wang K, Qu C, Hon G, Luna R, Glass CK, Rosenfeld MG, Aldred SF, Cooper SJ, Halees A, Lin JM, Shulha HP, Zhang X, Xu M, Haidar JN, Yu Y, Ruan Y, Iyer VR, Green RD, Wadelius C, Farnham PJ, Ren B, Harte RA, Hinrichs AS, Trumbower H, Clawson H, Hillman-Jackson J, Zweig AS, Smith K, Thakkapallayil A, Barber G, Kuhn RM, Karolchik D, Armengol L, Bird CP, de Bakker PI, Kern AD, Lopez-Bigas N, Martin JD, Stranger BE, Woodroffe A, Davydov E, Dimas A, Eyras E, Hallgrímsdóttir IB, Huppert J, Zody MC, Abecasis GR, Estivill X, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Koriabine M, Nefedov M, Osoegawa K, Yoshinaga Y, Zhu B, de Jong PJ.

Nature. 2007 Jun 14;447(7146):799-816.

5.

Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome.

Trinklein ND, Karaöz U, Wu J, Halees A, Force Aldred S, Collins PJ, Zheng D, Zhang ZD, Gerstein MB, Snyder M, Myers RM, Weng Z.

Genome Res. 2007 Jun;17(6):720-31.

6.

What is a gene, post-ENCODE? History and updated definition.

Gerstein MB, Bruce C, Rozowsky JS, Zheng D, Du J, Korbel JO, Emanuelsson O, Zhang ZD, Weissman S, Snyder M.

Genome Res. 2007 Jun;17(6):669-81. Review.

7.

Expression pattern analysis of transcribed HERV sequences is complicated by ex vivo recombination.

Flockerzi A, Maydt J, Frank O, Ruggieri A, Maldener E, Seifarth W, Medstrand P, Lengauer T, Meyerhans A, Leib-Mösch C, Meese E, Mayer J.

Retrovirology. 2007 Jun 6;4:39.

8.

Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease.

Moyes D, Griffiths DJ, Venables PJ.

Trends Genet. 2007 Jul;23(7):326-33. Review.

PMID:
17524519
9.

Methods for estimating human endogenous retrovirus activities from EST databases.

Oja M, Peltonen J, Blomberg J, Kaski S.

BMC Bioinformatics. 2007 May 3;8 Suppl 2:S11.

10.

Reconstitution of an infectious human endogenous retrovirus.

Lee YN, Bieniasz PD.

PLoS Pathog. 2007 Jan;3(1):e10.

11.

Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements.

Dewannieux M, Harper F, Richaud A, Letzelter C, Ribet D, Pierron G, Heidmann T.

Genome Res. 2006 Dec;16(12):1548-56.

12.

Altered transcriptional activity of human endogenous retroviruses in neuroepithelial cells after infection with Toxoplasma gondii.

Frank O, Jones-Brando L, Leib-Mosch C, Yolken R, Seifarth W.

J Infect Dis. 2006 Nov 15;194(10):1447-9.

PMID:
17054075
13.
14.

Methylation of endogenous human retroelements in health and disease.

Schulz WA, Steinhoff C, Florl AR.

Curr Top Microbiol Immunol. 2006;310:211-50. Review.

PMID:
16909913
15.

Expression of the human endogenous retrovirus-K transmembrane envelope, Rec and Np9 proteins in melanomas and melanoma cell lines.

Büscher K, Hahn S, Hofmann M, Trefzer U, Ozel M, Sterry W, Löwer J, Löwer R, Kurth R, Denner J.

Melanoma Res. 2006 Jun;16(3):223-34.

PMID:
16718269
16.

Development of real-time PCRs for detection and quantitation of human MMTV-like (HML) sequences HML expression in human tissues.

Muradrasoli S, Forsman A, Hu L, Blikstad V, Blomberg J.

J Virol Methods. 2006 Sep;136(1-2):83-92.

PMID:
16713632
17.

GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats.

Buzdin A, Kovalskaya-Alexandrova E, Gogvadze E, Sverdlov E.

Nucleic Acids Res. 2006 May 12;34(9):e67.

18.

Identification of a melanoma marker derived from melanoma-associated endogenous retroviruses.

Humer J, Waltenberger A, Grassauer A, Kurz M, Valencak J, Rapberger R, Hahn S, Löwer R, Wolff K, Bergmann M, Muster T, Mayer B, Pehamberger H.

Cancer Res. 2006 Feb 1;66(3):1658-63.

19.

CpG methylation suppresses transcriptional activity of human syncytin-1 in non-placental tissues.

Matousková M, Blazková J, Pajer P, Pavlícek A, Hejnar J.

Exp Cell Res. 2006 Apr 15;312(7):1011-20.

PMID:
16427621
20.

Genome-wide associations of gene expression variation in humans.

Stranger BE, Forrest MS, Clark AG, Minichiello MJ, Deutsch S, Lyle R, Hunt S, Kahl B, Antonarakis SE, Tavaré S, Deloukas P, Dermitzakis ET.

PLoS Genet. 2005 Dec;1(6):e78.

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