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Items: 1 to 20 of 37

1.

Genome-wide transcriptional analysis of the human cell cycle identifies genes differentially regulated in normal and cancer cells.

Bar-Joseph Z, Siegfried Z, Brandeis M, Brors B, Lu Y, Eils R, Dynlacht BD, Simon I.

Proc Natl Acad Sci U S A. 2008 Jan 22;105(3):955-60. doi: 10.1073/pnas.0704723105. Epub 2008 Jan 14.

2.

Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments.

Gauthier NP, Larsen ME, Wernersson R, de Lichtenberg U, Jensen LJ, Brunak S, Jensen TS.

Nucleic Acids Res. 2008 Jan;36(Database issue):D854-9. Epub 2007 Oct 16.

3.

Divergence of transcription factor binding sites across related yeast species.

Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, Seringhaus MR, Wang LY, Gerstein M, Snyder M.

Science. 2007 Aug 10;317(5839):815-9.

4.

Evolution of cell cycle control: same molecular machines, different regulation.

de Lichtenberg U, Jensen TS, Brunak S, Bork P, Jensen LJ.

Cell Cycle. 2007 Aug 1;6(15):1819-25. Epub 2007 Jun 4.

PMID:
17671420
5.

Combined analysis reveals a core set of cycling genes.

Lu Y, Mahony S, Benos PV, Rosenfeld R, Simon I, Breeden LL, Bar-Joseph Z.

Genome Biol. 2007;8(7):R146.

6.

Tissue-specific transcriptional regulation has diverged significantly between human and mouse.

Odom DT, Dowell RD, Jacobsen ES, Gordon W, Danford TW, MacIsaac KD, Rolfe PA, Conboy CM, Gifford DK, Fraenkel E.

Nat Genet. 2007 Jun;39(6):730-2. Epub 2007 May 21.

7.

Transcriptional regulation of protein complexes within and across species.

Tan K, Shlomi T, Feizi H, Ideker T, Sharan R.

Proc Natl Acad Sci U S A. 2007 Jan 23;104(4):1283-8. Epub 2007 Jan 16.

8.

Multiple independent evolutionary solutions to core histone gene regulation.

Mariño-Ramírez L, Jordan IK, Landsman D.

Genome Biol. 2006;7(12):R122.

9.

Co-evolution of transcriptional and post-translational cell-cycle regulation.

Jensen LJ, Jensen TS, de Lichtenberg U, Brunak S, Bork P.

Nature. 2006 Oct 5;443(7111):594-7. Epub 2006 Sep 27.

PMID:
17006448
11.

Identifying cycling genes by combining sequence homology and expression data.

Lu Y, Rosenfeld R, Bar-Joseph Z.

Bioinformatics. 2006 Jul 15;22(14):e314-22.

PMID:
16873488
12.

YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms.

Penkett CJ, Morris JA, Wood V, Bähler J.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W330-4.

13.

Parametric alignment of Drosophila genomes.

Dewey CN, Huggins PM, Woods K, Sturmfels B, Pachter L.

PLoS Comput Biol. 2006 Jun 23;2(6):e73. Epub 2006 Jun 23.

14.

A genetic signature of interspecies variations in gene expression.

Tirosh I, Weinberger A, Carmi M, Barkai N.

Nat Genet. 2006 Jul;38(7):830-4. Epub 2006 Jun 18.

PMID:
16783381
15.

The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast.

Marguerat S, Jensen TS, de Lichtenberg U, Wilhelm BT, Jensen LJ, Bähler J.

Yeast. 2006 Mar;23(4):261-277. doi: 10.1002/yea.1351.

16.
17.

TreeFam: a curated database of phylogenetic trees of animal gene families.

Li H, Coghlan A, Ruan J, Coin LJ, Hériché JK, Osmotherly L, Li R, Liu T, Zhang Z, Bolund L, Wong GK, Zheng W, Dehal P, Wang J, Durbin R.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D572-80.

18.

Comparative analysis of cell cycle regulated genes in eukaryotes.

Dyczkowski J, Vingron M.

Genome Inform. 2005;16(1):125-31.

PMID:
16362914
19.

Rewiring of the yeast transcriptional network through the evolution of motif usage.

Ihmels J, Bergmann S, Gerami-Nejad M, Yanai I, McClellan M, Berman J, Barkai N.

Science. 2005 Aug 5;309(5736):938-40.

20.

The cell cycle-regulated genes of Schizosaccharomyces pombe.

Oliva A, Rosebrock A, Ferrezuelo F, Pyne S, Chen H, Skiena S, Futcher B, Leatherwood J.

PLoS Biol. 2005 Jul;3(7):e225. Epub 2005 Jun 28.

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