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Items: 9

1.

Gene Ontology annotations at SGD: new data sources and annotation methods.

Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM.

Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. Epub 2007 Nov 3.

2.

Context-sensitive data integration and prediction of biological networks.

Myers CL, Troyanskaya OG.

Bioinformatics. 2007 Sep 1;23(17):2322-30. Epub 2007 Jun 28.

PMID:
17599939
3.

A scalable method for integration and functional analysis of multiple microarray datasets.

Huttenhower C, Hibbs M, Myers C, Troyanskaya OG.

Bioinformatics. 2006 Dec 1;22(23):2890-7. Epub 2006 Sep 27.

PMID:
17005538
4.

Putting microarrays in a context: integrated analysis of diverse biological data.

Troyanskaya OG.

Brief Bioinform. 2005 Mar;6(1):34-43. Review.

PMID:
15826355
5.

A case study of high-throughput biological data processing on parallel platforms.

Pekurovsky D, Shindyalov IN, Bourne PE.

Bioinformatics. 2004 Aug 12;20(12):1940-7. Epub 2004 Mar 25.

PMID:
15044237
6.

Open source clustering software.

de Hoon MJ, Imoto S, Nolan J, Miyano S.

Bioinformatics. 2004 Jun 12;20(9):1453-4. Epub 2004 Feb 10.

PMID:
14871861
7.

Application of high-throughput computing in bioinformatics.

Swindells M, Rae M, Pearce M, Moodie S, Miller R, Leach P.

Philos Trans A Math Phys Eng Sci. 2002 Jun 15;360(1795):1179-89.

8.

TM4: a free, open-source system for microarray data management and analysis.

Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostukovich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J.

Biotechniques. 2003 Feb;34(2):374-8. No abstract available.

PMID:
12613259
9.

Functional discovery via a compendium of expression profiles.

Hughes TR, Marton MJ, Jones AR, Roberts CJ, Stoughton R, Armour CD, Bennett HA, Coffey E, Dai H, He YD, Kidd MJ, King AM, Meyer MR, Slade D, Lum PY, Stepaniants SB, Shoemaker DD, Gachotte D, Chakraburtty K, Simon J, Bard M, Friend SH.

Cell. 2000 Jul 7;102(1):109-26.

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