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Items: 1 to 20 of 51

1.
2.

Critical assessment of methods of protein structure prediction-Round VII.

Moult J, Fidelis K, Kryshtafovych A, Rost B, Hubbard T, Tramontano A.

Proteins. 2007;69 Suppl 8:3-9.

3.

Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home.

Das R, Qian B, Raman S, Vernon R, Thompson J, Bradley P, Khare S, Tyka MD, Bhat D, Chivian D, Kim DE, Sheffler WH, Malmström L, Wollacott AM, Wang C, Andre I, Baker D.

Proteins. 2007;69 Suppl 8:118-28.

PMID:
17894356
4.

Template-based modeling and free modeling by I-TASSER in CASP7.

Zhang Y.

Proteins. 2007;69 Suppl 8:108-17.

PMID:
17894355
5.

Automated server predictions in CASP7.

Battey JN, Kopp J, Bordoli L, Read RJ, Clarke ND, Schwede T.

Proteins. 2007;69 Suppl 8:68-82.

PMID:
17894354
6.

Prediction of global and local model quality in CASP7 using Pcons and ProQ.

Wallner B, Elofsson A.

Proteins. 2007;69 Suppl 8:184-93.

PMID:
17894353
7.

Assessment of CASP7 predictions for template-based modeling targets.

Kopp J, Bordoli L, Battey JN, Kiefer F, Schwede T.

Proteins. 2007;69 Suppl 8:38-56.

PMID:
17894352
8.

Ab initio modeling of small proteins by iterative TASSER simulations.

Wu S, Skolnick J, Zhang Y.

BMC Biol. 2007 May 8;5:17.

9.

LOMETS: a local meta-threading-server for protein structure prediction.

Wu S, Zhang Y.

Nucleic Acids Res. 2007;35(10):3375-82. Epub 2007 May 3.

10.
11.

Can molecular dynamics simulations provide high-resolution refinement of protein structure?

Chen J, Brooks CL 3rd.

Proteins. 2007 Jun 1;67(4):922-30.

PMID:
17373704
12.

Near-native structure refinement using in vacuo energy minimization.

Summa CM, Levitt M.

Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3177-82. Epub 2007 Feb 20.

13.

Physically realistic homology models built with ROSETTA can be more accurate than their templates.

Misura KM, Chivian D, Rohl CA, Kim DE, Baker D.

Proc Natl Acad Sci U S A. 2006 Apr 4;103(14):5361-6. Epub 2006 Mar 27.

14.

A machine learning information retrieval approach to protein fold recognition.

Cheng J, Baldi P.

Bioinformatics. 2006 Jun 15;22(12):1456-63. Epub 2006 Mar 17.

PMID:
16547073
15.

Servers for protein structure prediction.

Fischer D.

Curr Opin Struct Biol. 2006 Apr;16(2):178-82. Epub 2006 Mar 20. Review.

PMID:
16546376
16.

The impact of structural genomics: expectations and outcomes.

Chandonia JM, Brenner SE.

Science. 2006 Jan 20;311(5759):347-51. Review.

PMID:
16424331
17.

MODBASE: a database of annotated comparative protein structure models and associated resources.

Pieper U, Eswar N, Davis FP, Braberg H, Madhusudhan MS, Rossi A, Marti-Renom M, Karchin R, Webb BM, Eramian D, Shen MY, Kelly L, Melo F, Sali A.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D291-5.

18.

Assessment of predictions submitted for the CASP6 comparative modeling category.

Tress M, Ezkurdia I, Graña O, López G, Valencia A.

Proteins. 2005;61 Suppl 7:27-45.

PMID:
16187345
19.

Critical assessment of methods of protein structure prediction (CASP)--round 6.

Moult J, Fidelis K, Rost B, Hubbard T, Tramontano A.

Proteins. 2005;61 Suppl 7:3-7.

PMID:
16187341
20.

Toward high-resolution de novo structure prediction for small proteins.

Bradley P, Misura KM, Baker D.

Science. 2005 Sep 16;309(5742):1868-71.

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