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Items: 10

1.

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.

Dohm JC, Lottaz C, Borodina T, Himmelbauer H.

Genome Res. 2007 Nov;17(11):1697-706. Epub 2007 Oct 1.

2.

Extending assembly of short DNA sequences to handle error.

Jeck WR, Reinhardt JA, Baltrus DA, Hickenbotham MT, Magrini V, Mardis ER, Dangl JL, Jones CD.

Bioinformatics. 2007 Nov 1;23(21):2942-4. Epub 2007 Sep 24.

PMID:
17893086
3.

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.

Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, Xie X, Meissner A, Wernig M, Jaenisch R, Nusbaum C, Lander ES, Bernstein BE.

Nature. 2007 Aug 2;448(7153):553-60. Epub 2007 Jul 1.

4.

Genome-wide mapping of in vivo protein-DNA interactions.

Johnson DS, Mortazavi A, Myers RM, Wold B.

Science. 2007 Jun 8;316(5830):1497-502. Epub 2007 May 31.

5.

Assembling millions of short DNA sequences using SSAKE.

Warren RL, Sutton GG, Jones SJ, Holt RA.

Bioinformatics. 2007 Feb 15;23(4):500-1. Epub 2006 Dec 8.

PMID:
17158514
6.

Accurate multiplex polony sequencing of an evolved bacterial genome.

Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM.

Science. 2005 Sep 9;309(5741):1728-32. Epub 2005 Aug 4.

7.

ARACHNE: a whole-genome shotgun assembler.

Batzoglou S, Jaffe DB, Stanley K, Butler J, Gnerre S, Mauceli E, Berger B, Mesirov JP, Lander ES.

Genome Res. 2002 Jan;12(1):177-89.

8.

An Eulerian path approach to DNA fragment assembly.

Pevzner PA, Tang H, Waterman MS.

Proc Natl Acad Sci U S A. 2001 Aug 14;98(17):9748-53.

9.

A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms.

Sachidanandam R, Weissman D, Schmidt SC, Kakol JM, Stein LD, Marth G, Sherry S, Mullikin JC, Mortimore BJ, Willey DL, Hunt SE, Cole CG, Coggill PC, Rice CM, Ning Z, Rogers J, Bentley DR, Kwok PY, Mardis ER, Yeh RT, Schultz B, Cook L, Davenport R, Dante M, Fulton L, Hillier L, Waterston RH, McPherson JD, Gilman B, Schaffner S, Van Etten WJ, Reich D, Higgins J, Daly MJ, Blumenstiel B, Baldwin J, Stange-Thomann N, Zody MC, Linton L, Lander ES, Altshuler D; International SNP Map Working Group.

Nature. 2001 Feb 15;409(6822):928-33.

PMID:
11237013
10.

DNA sequencing with chain-terminating inhibitors.

Sanger F, Nicklen S, Coulson AR.

Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7.

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