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Items: 1 to 20 of 56

1.

Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators.

Rodionov DA, De Ingeniis J, Mancini C, Cimadamore F, Zhang H, Osterman AL, Raffaelli N.

Nucleic Acids Res. 2008 Apr;36(6):2047-59. doi: 10.1093/nar/gkn047. Epub 2008 Feb 14.

2.

Mechanism of nicotinic acid transport in human liver cells: experiments with HepG2 cells and primary hepatocytes.

Said HM, Nabokina SM, Balamurugan K, Mohammed ZM, Urbina C, Kashyap ML.

Am J Physiol Cell Physiol. 2007 Dec;293(6):C1773-8. Epub 2007 Oct 10.

3.

How gene order is influenced by the biophysics of transcription regulation.

Kolesov G, Wunderlich Z, Laikova ON, Gelfand MS, Mirny LA.

Proc Natl Acad Sci U S A. 2007 Aug 28;104(35):13948-53. Epub 2007 Aug 20.

4.

Comparative genomic reconstruction of transcriptional regulatory networks in bacteria.

Rodionov DA.

Chem Rev. 2007 Aug;107(8):3467-97. Epub 2007 Jul 18. Review. No abstract available.

5.

Crystal structure of a transcription regulator (TM1602) from Thermotoga maritima at 2.3 A resolution.

Weekes D, Miller MD, Krishna SS, McMullan D, McPhillips TM, Acosta C, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Morse AT, Quijano K, Spraggon G, van den Bedem H, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.

Proteins. 2007 Apr 1;67(1):247-52. No abstract available.

PMID:
17256761
6.

GenBank.

Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.

Nucleic Acids Res. 2007 Jan;35(Database issue):D21-5.

7.

A subsystems-based approach to the identification of drug targets in bacterial pathogens.

Osterman AL, Begley TP.

Prog Drug Res. 2007;64:131, 133-70. Review.

PMID:
17195474
8.

NAD+ metabolism in health and disease.

Belenky P, Bogan KL, Brenner C.

Trends Biochem Sci. 2007 Jan;32(1):12-9. Epub 2006 Dec 11. Review. Erratum in: Trends Biochem Sci. 2008 Jan;33(1):1.

PMID:
17161604
9.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection.

Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H.

Mol Syst Biol. 2006;2:2006.0008. Epub 2006 Feb 21.

10.

Comparative genomics of NAD biosynthesis in cyanobacteria.

Gerdes SY, Kurnasov OV, Shatalin K, Polanuyer B, Sloutsky R, Vonstein V, Overbeek R, Osterman AL.

J Bacteriol. 2006 Apr;188(8):3012-23.

11.

Pfam: clans, web tools and services.

Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D247-51.

12.

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.

Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, de Crécy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Rückert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V.

Nucleic Acids Res. 2005 Oct 7;33(17):5691-702. Print 2005.

13.

YrxA is the transcriptional regulator that represses de novo NAD biosynthesis in Bacillus subtilis.

Rossolillo P, Marinoni I, Galli E, Colosimo A, Albertini AM.

J Bacteriol. 2005 Oct;187(20):7155-60.

14.

Evolution of the NadR regulon in Enterobacteriaceae.

Gerasimova AV, Gelfand MS.

J Bioinform Comput Biol. 2005 Aug;3(4):1007-19.

PMID:
16078372
15.
16.

Regulation of NAD synthesis by the trifunctional NadR protein of Salmonella enterica.

Grose JH, Bergthorsson U, Roth JR.

J Bacteriol. 2005 Apr;187(8):2774-82.

17.

Mechanism and regulation of human intestinal niacin uptake.

Nabokina SM, Kashyap ML, Said HM.

Am J Physiol Cell Physiol. 2005 Jul;289(1):C97-103. Epub 2005 Feb 23.

18.

Structure and chemistry of the Sir2 family of NAD+-dependent histone/protein deactylases.

Marmorstein R.

Biochem Soc Trans. 2004 Dec;32(Pt 6):904-9. Review.

PMID:
15506920
19.

Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs.

Korbel JO, Jensen LJ, von Mering C, Bork P.

Nat Biotechnol. 2004 Jul;22(7):911-7.

PMID:
15229555
20.

WebLogo: a sequence logo generator.

Crooks GE, Hon G, Chandonia JM, Brenner SE.

Genome Res. 2004 Jun;14(6):1188-90.

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